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Report for CCDS76004.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
76004.1 Public Homo sapiens X TCEAL4 24 110 108 CCDS HistoryNCBI Gene:79921Re-query CCDS DB by CCDS ID:76004.1Re-query CCDS DB by GeneID:79921See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 76004.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372629.4 ENSP00000361712.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372629.4Link to Ensembl Protein Viewer:ENSP00000361712.4Re-query CCDS DB by Nucleotide ID:ENST00000372629Re-query CCDS DB by Protein ID:ENSP00000361712
Original member Current member NCBI NM_001300901.2 NP_001287830.1 Accepted alive Link to Nucleotide Sequence:NM_001300901.2Link to Protein Sequence:NP_001287830.1Re-query CCDS DB by Nucleotide ID:NM_001300901Re-query CCDS DB by Protein ID:NP_001287830Link to BLAST:NP_001287830.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001287830.1 358 Q96EI5-2 358 100% 0 0

Chromosomal Locations for CCDS 76004.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 103576470 103576532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103577094 103577213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103585625 103585760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103586219 103586301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 103586649 103587323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGCCAGCTGGAGGCCAGGCGCCGCAGCTCACGCCTGTAATCCCAGCGTTTTGGGAGGCCAGGGGCCTCC
CAAATTCAAAAGGAAGAGACAAAGTCCACATCTGTCAATGCGAAGAATGGAAAGGTCACATATCATATGT
GGAGCGGGACATAACAACTTCGGAAATTAAATCTCTTCCCCAGGTCAGTGTGCGGGCCTTCCACGCTGCC
AGCGGAACACTGGAATGGCGGAAGGGGAACGGGTACGGCAGGGGGAAAGGCTGGGGGTGGGGTCGGGTCG
AGTCGAGGGAAGCTGGCCCGAGTGTGGACAGAGATGGCGGTCTGCGCGTCTGTTGTTCCCAGCGCTCTGC
GAAGCCTGAAAAGGAGGAGCAACCTGTCCAGAATCCCCGCAGGTCCGTGAAAGACAGGAAAAGGAGGGGA
AATCTCGACATGGAAAAACTCTACAGTGAAAATGAAGGAATGGCTTCAAACCAAGGAAAGATGGAAAATG
AAGAACAGCCACAAGACGAGAGAAAGCCAGAAGTAACTTGTACTCTGGAAGACAAGAAGTTAGAAAACGA
GGGAAAGACAGAAAACAAGGGCAAAACAGGAGATGAGGAAATGTTAAAGGATAAAGGAAAGCCAGAGAGT
GAGGGAGAGGCAAAAGAAGGAAAGTCAGAGAGGGAGGGAGAGTCAGAGATGGAGGGAGGATCAGAGAGAG
AGGGAAAACCAGAGATAGAGGGAAAGCCAGAGAGTGAAGGAGAGCCAGGGAGTGAAACAAGGGCTGCAGG
AAAGCGCCCAGCTGAGGATGATGTACCCAGGAAAGCCAAAAGAAAAACTAATAAGGGGCTGGCTCATTAC
CTCAAGGAGTATAAAGAGGCCATACATGATATGAATTTCAGCAATGAGGACATGATAAGAGAATTTGACA
ATATGGCTAAGGTGCAGGATGAGAAGAGAAAAAGCAAACAGAAATTGGGGGCGTTTTTGTGGATGCAAAG
AAATTTACAGGACCCCTTCTACCCTAGAGGTCCAAGGGAATTCAGGGGTGGCTGCAGGGCCCCACGAAGG
GACATTGAAGACATTCCTTATGTGTAG

Translation (358 aa):
MPAGGQAPQLTPVIPAFWEARGLPNSKGRDKVHICQCEEWKGHISYVERDITTSEIKSLPQVSVRAFHAA
SGTLEWRKGNGYGRGKGWGWGRVESREAGPSVDRDGGLRVCCSQRSAKPEKEEQPVQNPRRSVKDRKRRG
NLDMEKLYSENEGMASNQGKMENEEQPQDERKPEVTCTLEDKKLENEGKTENKGKTGDEEMLKDKGKPES
EGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEPGSETRAAGKRPAEDDVPRKAKRKTNKGLAHY
LKEYKEAIHDMNFSNEDMIREFDNMAKVQDEKRKSKQKLGAFLWMQRNLQDPFYPRGPREFRGGCRAPRR
DIEDIPYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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