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Report for CCDS75860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75860.1 Public Homo sapiens 9 PTPDC1 24 110 108 CCDS HistoryNCBI Gene:138639Re-query CCDS DB by CCDS ID:75860.1Re-query CCDS DB by GeneID:138639See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75860.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620992.5 ENSP00000477817.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620992.5Link to Ensembl Protein Viewer:ENSP00000477817.1Re-query CCDS DB by Nucleotide ID:ENST00000620992Re-query CCDS DB by Protein ID:ENSP00000477817
Original member Current member NCBI NM_001253829.2 NP_001240758.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001253829.2Link to Protein Sequence:NP_001240758.1Re-query CCDS DB by Nucleotide ID:NM_001253829Re-query CCDS DB by Protein ID:NP_001240758Link to BLAST:NP_001240758.1

Chromosomal Locations for CCDS 75860.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 94084531 94084774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94085251 94085422 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94087831 94087911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94088145 94088263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94095317 94095454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94097321 94098579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94101566 94101751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94104275 94104385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 94107828 94107944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2427 nt):
ATGCAGGTGCAGGATGCAACCAGGCGGCCCTCAGCCGTGCGCTTCCTCAGCTCCTTTCTCCAGGGCCGCC
GGCACTCCACCTCAGACCCAGTACTGCGGCTGCAGCAGGCCCGGCGGGGCTCTGGCTTGGGCTCCGGCTC
TGCCACGAAGCTGCTGTCCTCGTCCTCTCTCCAGGTGATGGTGGCTGTTTCCTCAGTCAGCCATGCAGAG
GGAAACCCAACTTTCCCCGAAAGAAAAAGTAAAGGAAATTTAGAACGTCCAACACCAAAGTACACAAAAG
TAGGGGAGCGTTTACGGCATGTCATTCCTGGACACATGGCATGTTCCATGGCGTGTGGCGGTAGAGCTTG
CAAGTATGAGAACCCAGCCCGCTGGAGTGAGCAGGAGCAAGCCATTAAGGGGGTTTACTCATCCTGGGTC
ACTGATAATATACTGGCCATGGCCCGCCCATCCTCTGAGCTCCTGGAGAAGTACCACATCATTGATCAGT
TCCTCAGCCATGGCATAAAAACAATAATCAACCTCCAGCGCCCTGGTGAGCATGCTAGCTGTGGGAACCC
TCTGGAACAAGAAAGTGGCTTCACATACCTTCCTGAGGCTTTCATGGAGGCTGGCATTTACTTCTACAAT
TTCGGATGGAAGGATTATGGTGTAGCGTCTCTTACTACTATCCTAGATATGGTGAAGGTGATGACATTTG
CCTTACAGGAAGGAAAAGTAGCTATCCATTGTCATGCAGGGCTTGGTCGAACAGGTGTTTTAATAGCCTG
TTACTTAGTTTTTGCAACGAGAATGACTGCTGACCAAGCAATTATATTTGTGCGGGCAAAGCGACCCAAT
TCCATACAAACCAGAGGACAGCTCCTCTGTGTAAGGGAATTTACTCAGTTTCTAACTCCTCTCCGCAATA
TATTCTCTTGCTGTGATCCCAAAGCACATGCTGTCACCTTACCTCAATATCTAATTCGCCAGCGTCATCT
GCTTCATGGTTATGAGGCACGACTTCTGAAACACGTGCCAAAAATTATCCACCTAGTTTGCAAATTGCTG
CTGGACTTAGCGGAGAACAGGCCAGTGATGATGAAGGATGTGTCCGAAGGACCTGGTCTCTCTGCTGAAA
TAGAAAAGACAATGTCTGAGATGGTCACCATGCAGCTGGATAAAGAGTTACTGAGGCATGACAGTGATGT
GTCCAACCCGCCTAACCCCACTGCAGTGGCAGCAGATTTTGACAATCGAGGCATGATTTTCTCCAATGAG
CAACAGTTTGACCCTCTTTGGAAAAGGCGGAATGTTGAGTGCCTTCAACCCCTGACTCATCTGAAAAGGC
GGCTCAGCTACAGTGACTCAGATTTAAAGAGGGCCGAGAACCTCCTGGAGCAAGGGGAGACTCCACAGAC
AGTGCCTGCCCAGATCTTGGTTGGCCACAAGCCCAGGCAGCAGAAGCTCATAAGCCATTGTTACATCCCA
CAGTCTCCAGAACCAGACTTACACAAGGAAGCCTTGGTTCGCAGCACACTTTCTTTCTGGAGTCAGTCAA
AGTTTGGAGGCCTGGAAGGACTCAAAGATAATGGGTCACCAATTTTCCATGGAAGGATCATTCCAAAGGA
AGCACAGCAGAGTGGAGCTTTCTCTGCAGATGTTTCAGGCTCACACAGCCCTGGGGAGCCAGTTTCACCC
AGCTTTGCAAATGTCCATAAGGATCCAAACCCTGCTCACCAGCAAGTGTCTCACTGTCAGTGTAAAACTC
ATGGTGTTGGGAGCCCTGGCTCTGTCAGGCAGAACAGCAGGACACCCCGAAGCCCTCTGGACTGTGGCTC
CAGTCCCAAAGCACAGTTCTTGGTTGAACATGAAACCCAGGACAGTAAAGATCTGTCTGAAGCAGCTTCA
CACTCTGCATTACAGTCTGAATTGAGTGCTGAGGCAAGAAGAATACTGGCGGCCAAAGCCCTAGCAAATT
TAAATGAATCTGTAGAAAAGGAGGAACTAAAAAGGAAGGTAGAAATGTGGCAGAAAGAGCTTAATTCCCG
AGATGGAGCTTGGGAAAGAATATGTGGCGAGAGGGACCCTTTCATCCTATGCAGCTTGATGTGGTCTTGG
GTGGAGCAACTGAAGGAGCCTGTAATCACCAAAGAGGATGTGGACATGTTGGTTGACAGGCGAGCAGATG
CCGCAGAAGCACTTTTTTTATTAGAGAAGGGACAGCACCAGACTATTCTCTGCGTGTTGCACTGCATAGT
GAACCTGCAGACAATTCCCGTGGATGTGGAGGAAGCTTTCCTTGCCCATGCCATTAAGGCATTCACTAAG
GTTAATTTTGATTCTGAAAATGGACCAACAGTTTACAACACCCTGAAGAAAATATTTAAGCACACGCTGG
AAGAAAAAAGAAAAATGACAAAAGATGGCCCTAAGCCTGGCCTCTAG

Translation (808 aa):
MQVQDATRRPSAVRFLSSFLQGRRHSTSDPVLRLQQARRGSGLGSGSATKLLSSSSLQVMVAVSSVSHAE
GNPTFPERKSKGNLERPTPKYTKVGERLRHVIPGHMACSMACGGRACKYENPARWSEQEQAIKGVYSSWV
TDNILAMARPSSELLEKYHIIDQFLSHGIKTIINLQRPGEHASCGNPLEQESGFTYLPEAFMEAGIYFYN
FGWKDYGVASLTTILDMVKVMTFALQEGKVAIHCHAGLGRTGVLIACYLVFATRMTADQAIIFVRAKRPN
SIQTRGQLLCVREFTQFLTPLRNIFSCCDPKAHAVTLPQYLIRQRHLLHGYEARLLKHVPKIIHLVCKLL
LDLAENRPVMMKDVSEGPGLSAEIEKTMSEMVTMQLDKELLRHDSDVSNPPNPTAVAADFDNRGMIFSNE
QQFDPLWKRRNVECLQPLTHLKRRLSYSDSDLKRAENLLEQGETPQTVPAQILVGHKPRQQKLISHCYIP
QSPEPDLHKEALVRSTLSFWSQSKFGGLEGLKDNGSPIFHGRIIPKEAQQSGAFSADVSGSHSPGEPVSP
SFANVHKDPNPAHQQVSHCQCKTHGVGSPGSVRQNSRTPRSPLDCGSSPKAQFLVEHETQDSKDLSEAAS
HSALQSELSAEARRILAAKALANLNESVEKEELKRKVEMWQKELNSRDGAWERICGERDPFILCSLMWSW
VEQLKEPVITKEDVDMLVDRRADAAEALFLLEKGQHQTILCVLHCIVNLQTIPVDVEEAFLAHAIKAFTK
VNFDSENGPTVYNTLKKIFKHTLEEKRKMTKDGPKPGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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