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Report for CCDS75478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75478.1 Public Homo sapiens 6 SMAP1 24 110 108 CCDS HistoryNCBI Gene:60682Re-query CCDS DB by CCDS ID:75478.1Re-query CCDS DB by GeneID:60682See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 75478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000619054.4 ENSP00000484538.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000619054.4Link to Ensembl Protein Viewer:ENSP00000484538.1Re-query CCDS DB by Nucleotide ID:ENST00000619054Re-query CCDS DB by Protein ID:ENSP00000484538
Original member Current member NCBI NM_001281440.1 NP_001268369.1 Accepted alive Link to Nucleotide Sequence:NM_001281440.1Link to Protein Sequence:NP_001268369.1Re-query CCDS DB by Nucleotide ID:NM_001281440Re-query CCDS DB by Protein ID:NP_001268369Link to BLAST:NP_001268369.1

Chromosomal Locations for CCDS 75478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70668629 70668716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70732378 70732511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70754980 70755065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70773350 70773425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70791689 70791769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70798657 70798737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70836941 70837028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70852540 70852664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70856859 70857030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70857922 70858229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70860200 70860334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1374 nt):
ATGGAGCCCTACCTGCCTGCCCACCTGACAGCTTTTGTACAAGGCTTTTATCTCTGCTTCCTGAAAAAGA
GTATGGTGGTCTTTTTCGGTCCTCGATGGGCTTCCTGGAATATTGGTGTGTTTATTTGCATCAGATGTGC
TGGAATTCATAGAAATCTTGGGGTTCATATATCCAGGGTCAAATCAGTCAACCTAGACCAATGGACAGCA
GAACAGATACAGTGCATGCAAGATATGGGAAATACTAAAGCAAGACTACTCTATGAAGCCAATCTTCCAG
AGAACTTTCGAAGACCACAGACAGATCAAGCAGTGGAATTTTTCATCAGAGATAAATATGAAAAGAAGAA
ATACTACGATAAAAATGCCATAGCTATTACAAATATTTCCTCCTCTGATGCTCCTCTTCAGCCTTTGGTA
TCCTCTCCTTCTCTGCAAGCTGCTGTTGACAAAAATAAATTGGAGAAAGAAAAGGAAAAAAAAAAGGAAG
AGAAAAAGAGAGAAAAGGAGCCAGAAAAGCCGGCAAAACCACTTACAGCTGAAAAGCTGCAGAAGAAAGA
TCAGCAACTGGAGCCTAAAAAAAGTACCAGCCCTAAAAAAGCTGCGGAGCCCACTGTGGATCTTTTAGGA
CTTGATGGCCCTGCTGTGGCACCAGTGACCAACGGGAACACAACGGTGCCACCCCTGAACGATGATCTGG
ACATCTTTGGACCGATGATTTCTAATCCCTTACCTGCAACTGTCATGCCCCCAGCTCAGGGGACACCCTC
TGCACCAGCAGCTGCAACCCTGTCTACAGTAACATCTGGGGATCTAGATTTATTCACTGAGCAAACTACA
AAATCAGAAGAAGTGGCAAAGAAACAACTTTCCAAAGACTCCATCTTATCTCTGTATGGCACAGGAACCA
TTCAACAGCAAAGTACTCCTGGTGTATTTATGGGACCCACAAATATACCATTTACCTCACAAGCACCAGC
TGCATTTCAGGGCTTTCCATCGATGGGCGTGCCTGTGCCTGCAGCTCCTGGCCTTATAGGAAATGTGATG
GGACAGAGTCCAAGCATGATGGTGGGCATGCCCATGCCCAATGGGTTTATGGGAAATGCACAAACTGGTG
TGATGCCACTTCCTCAGAACGTTGTTGGCCCCCAAGGAGGAATGGTGGGACAAATGGGTGCACCCCAGAG
TAAGTTTGGCCTGCCGCAAGCTCAGCAGCCCCAGTGGAGCCTCTCACAGATGAATCAGCAGATGGCTGGC
ATGAGTATCAGTAGTGCAACCCCTACTGCAGGTTTTGGCCAGCCCTCCAGCACAACAGCAGGATGGTCTG
GAAGCTCATCAGGTCAGACTCTCAGCACACAACTGTGGAAATGA

Translation (457 aa):
MEPYLPAHLTAFVQGFYLCFLKKSMVVFFGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTA
EQIQCMQDMGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAIAITNISSSDAPLQPLV
SSPSLQAAVDKNKLEKEKEKKKEEKKREKEPEKPAKPLTAEKLQKKDQQLEPKKSTSPKKAAEPTVDLLG
LDGPAVAPVTNGNTTVPPLNDDLDIFGPMISNPLPATVMPPAQGTPSAPAAATLSTVTSGDLDLFTEQTT
KSEEVAKKQLSKDSILSLYGTGTIQQQSTPGVFMGPTNIPFTSQAPAAFQGFPSMGVPVPAAPGLIGNVM
GQSPSMMVGMPMPNGFMGNAQTGVMPLPQNVVGPQGGMVGQMGAPQSKFGLPQAQQPQWSLSQMNQQMAG
MSISSATPTAGFGQPSSTTAGWSGSSSGQTLSTQLWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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