NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7539.1 Public Homo sapiens 10 SFXN2 24 110 108 CCDS HistoryNCBI Gene:118980Re-query CCDS DB by CCDS ID:7539.1Re-query CCDS DB by GeneID:118980See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7539.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369893.10 ENSP00000358909.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369893.10Link to Ensembl Protein Viewer:ENSP00000358909.4Re-query CCDS DB by Nucleotide ID:ENST00000369893Re-query CCDS DB by Protein ID:ENSP00000358909
Original member Current member NCBI NM_001350989.2 NP_001337918.1 Accepted alive Link to Nucleotide Sequence:NM_001350989.2Link to Protein Sequence:NP_001337918.1Re-query CCDS DB by Nucleotide ID:NM_001350989Re-query CCDS DB by Protein ID:NP_001337918Link to BLAST:NP_001337918.1
Original member Current member NCBI NM_178858.6 NP_849189.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178858.6Link to Protein Sequence:NP_849189.1Re-query CCDS DB by Nucleotide ID:NM_178858Re-query CCDS DB by Protein ID:NP_849189Link to BLAST:NP_849189.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337918.1 322 Q96NB2 322 100% 0 0
NP_849189.1 322 Q96NB2 322 100% 0 0

Chromosomal Locations for CCDS 7539.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102726637 102726797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102726987 102727157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102728431 102728529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102729319 102729394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102729723 102729808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102731723 102731783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102732152 102732218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102732859 102732908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102733554 102733603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102735862 102735909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102737663 102737762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGGAGGCTGACCTGTCTGGCTTTAACATCGATGCCCCCCGTTGGGACCAGCGCACCTTCCTGGGGAGAG
TGAAGCACTTCCTAAACATCACGGACCCCCGCACTGTCTTTGTATCTGAGCGGGAGCTGGACTGGGCCAA
GGTGATGGTGGAGAAGAGCAGGATGGGGGTTGTGCCCCCAGGCACCCAAGTGGAGCAGCTGCTGTATGCC
AAGAAGCTGTATGACTCGGCCTTCCACCCCGACACTGGGGAGAAGATGAATGTCATCGGGCGCATGTCTT
TCCAGCTTCCTGGCGGCATGATCATCACGGGCTTCATGCTCCAGTTCTACAGGACGATGCCGGCGGTGAT
CTTCTGGCAGTGGGTGAACCAGTCCTTCAATGCCTTAGTCAACTACACCAACAGGAATGCGGCTTCCCCC
ACATCAGTCAGGCAGATGGCCCTTTCCTACTTCACAGCCACAACCACTGCTGTGGCCACGGCTGTGGGCA
TGAACATGTTGACAAAGAAAGCGCCGCCCTTGGTGGGCCGCTGGGTGCCCTTTGCCGCTGTGGCTGCGGC
TAACTGTGTCAATATCCCCATGATGCGACAGCAGGAGCTCATAAAGGGAATCTGCGTGAAGGACAGGAAT
GAAAATGAGATTGGTCATTCCCGGAGAGCTGCGGCCATAGGCATCACCCAAGTAGTTATTTCTCGGATCA
CCATGTCAGCTCCTGGGATGATCTTGCTGCCAGTCATCATGGAAAGGCTTGAGAAATTGCACTTCATGCA
GAAAGTCAAGGTCCTGCACGCCCCATTGCAGGTCATGCTGAGCGGGTGCTTCCTCATCTTCATGGTGCCA
GTGGCGTGTGGGCTTTTCCCACAGAAATGTGAATTGCCAGTTTCCTATCTGGAACCGAAGCTCCAAGACA
CTATCAAGGCCAAGTATGGAGAACTTGAGCCTTATGTCTACTTCAATAAGGGTCTCTAA

Translation (322 aa):
MEADLSGFNIDAPRWDQRTFLGRVKHFLNITDPRTVFVSERELDWAKVMVEKSRMGVVPPGTQVEQLLYA
KKLYDSAFHPDTGEKMNVIGRMSFQLPGGMIITGFMLQFYRTMPAVIFWQWVNQSFNALVNYTNRNAASP
TSVRQMALSYFTATTTAVATAVGMNMLTKKAPPLVGRWVPFAAVAAANCVNIPMMRQQELIKGICVKDRN
ENEIGHSRRAAAIGITQVVISRITMSAPGMILLPVIMERLEKLHFMQKVKVLHAPLQVMLSGCFLIFMVP
VACGLFPQKCELPVSYLEPKLQDTIKAKYGELEPYVYFNKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH