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Report for CCDS75342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75342.1 Public Homo sapiens 5 PCDHGB6 24 110 108 CCDS HistoryNCBI Gene:56100Re-query CCDS DB by CCDS ID:75342.1Re-query CCDS DB by GeneID:56100See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75342.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616430.1 ENSP00000479143.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616430.1Link to Ensembl Protein Viewer:ENSP00000479143.1Re-query CCDS DB by Nucleotide ID:ENST00000616430Re-query CCDS DB by Protein ID:ENSP00000479143
Original member Current member NCBI NM_032100.1 NP_115271.1 Accepted alive Link to Nucleotide Sequence:NM_032100.1Link to Protein Sequence:NP_115271.1Re-query CCDS DB by Nucleotide ID:NM_032100Re-query CCDS DB by Protein ID:NP_115271Link to BLAST:NP_115271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115271.1 820 Q9Y5F9-2 820 100% 0 0

Chromosomal Locations for CCDS 75342.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141408203 141410665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2463 nt):
ATGGGAGGGAGCTGCGCGCAGAGGCGCCGGGCCGGCCCGCGGCAGGTGCTATTTCCTTTGCTGCTGCCTT
TGTTCTACCCCACCCTGAGTGAGCCGATCCGCTACTCGATTCCGGAGGAGCTGGCCAAGGGCTCGGTGGT
GGGGAACCTCGCTAAGGATCTAGGGCTCAGTGTCCTGGATGTGTCGGCTCGCAAGCTGCGAGTGAGCGCG
GAGAAGCTGCACTTCAGCGTAGACGCGGAGAGCGGGGACTTACTTGTGAAGAACCGAATAGACCGTGAGC
AAATATGCAAAGAGAGAAGAAGATGTGAGTTGCAATTGGAAGCTGTGGTGGAAAATCCTTTAAATATTTT
TCATGTCATTGTGGTGATTGAGGATGTTAATGACCACGCCCCTCAATTTGATAAAAAGGAAATACATTTA
GAAATTTTCGAATCTGCATCCGCTGGTACACGACTATCGCTTGACCCTGCCACGGATCCTGATATAAACA
TAAACTCAATTAAAGATTATAAGATAAACTCTAATCCTTATTTTTCATTAATGGTTAGAGTTAATTCCGA
TGGTGGCAAATACCCAGAGTTATCTCTGGAGAAACTCCTAGACCGGGAAGAACAGAGATCTCATAGCTTG
ATATTGACTGCCTTGGACGGAGGGGACCCACCAAGAAGTGCCACCGCTCACATAGAAATTTCTGTCAAGG
ATACCAATGATAACCCCCCGGTTTTCAGCAGAGACGAATATAGAATTAGTCTTAGTGAAAATCTGCCCCC
TGGGTCCCCTGTGTTGCAAGTGACAGCCACTGACCAGGATGAGGGGGTCAATGCTGAGATAAACTACTAC
TTCCGAAGCACTGCCCAGAGCACAAAACATATGTTCTCATTGGATGAGAAAACAGGTATGATTAAGAATA
ACCAGTCATTTGATTTTGAAGATGTAGAAAGGTACACCATGGAAGTGGAAGCGAAGGACGGAGGTGGTCT
CTCTACCCAGTGTAAAGTAATCATAGAAATCCTTGATGAAAACGACAACAGCCCAGAAATAATCATCACT
TCTCTCTCTGATCAGATTTTGGAGAATTCACCTCCAGGAATGGTTGTTGCCCTCTTCAAAACACGGGATC
TGGATTTCGGAGGAAATGGAGAAGTCAGGTGTAATATAGAAACAGACATTCCATTCAAGATTTATTCTTC
TTCCAATAACTACTACAAACTGGTGACAGATGGAGCCCTGGACCGAGAGCAGACACCAGAATACAATGTC
ACCATCGTAGCCACTGACAGGGGCAAGCCGCCTCTTTCTTCCAGTAGAAGCATCACCTTGTATGTCGCTG
ACATCAACGACAACGCCCCAGTTTTCGACCAGACGTCCTACGTGGTCCACGTGGCCGAGAACAACCCGCC
AGGAGCCTCCATTGCGCAAGTGAGCGCCTCTGACCCGGATTTGGGGCTCAATGGCCACATCTCCTACTCT
ATAGTGGCGAGTGACCTAGAGCCCCTGGCGGTGTCGTCATACGTGTCAGTGAGCGCGCAGAGCGGGGTGG
TGTTCGCGCAGCGCGCCTTTGATCACGAGCAGCTGCGCGCCTTCGCGCTCACGCTGCAGGCCCGCGACCA
CGGCTCGCCCACGCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGGAGACCGCAATGACAACGCACCG
CGGGTGCTGTACCCAGCTCTGGGTCCTGACGGCTCCGCGTTCTTCGATATGGTACCTCGCTCTGCAGAGC
CCGGCTACCTAGTGACTAAGGTGGTAGCGGTGGACGCCGACTCGGGACACAACGCCTGGCTGTCCTACCA
CGTGCTGCAGGCCAGTGAGCCCGGACTCTTCAGCCTGGGGCTGCGCACTGGGGAGGTGCGCACGGCTCGA
GCCTTAGGCGACAGGGACGCAGCCCGCCAGCGCCTGCTGGTCGCTGTGCGTGACGGTGGACAGCCGCCAC
TCTCTGCCACCGCCACGCTTCATCTGGTCTTCGCAGACAACTTGCAAGAGATACTGCCAGACCTCAGCGA
CCGCCCTGTACTCTCTGACCCCCAGGCTGAACTGCAGTTTTACCTGGTGGTGGCCTTGGCCTTAATCTCA
GTGCTCTTCCTCCTCGCCGTGATTCTGGCCATTGCCTTGCGCCTGCGACGCTCTCTCAGCCCTGCTACTT
GGGACTGCTTCCATCCTGGTCTCTGTGTCAAGTCTGGACCTGTAGTTCCCCCCAACTACAGTGAGGGGAC
TTTGCCTTATTCTTATAATCTGTGCATTGCACATACGGGTACAAAAGAGTTTAATTTCCTAAAATGCAGT
GTGCCCCTACATTCCAATGAAGACATGGTTTGCAGTGTTTCTCCTGGAGCCTTAATTCCACCTCATGGTG
GGGAGGATTTGACTTCACATCCTGAGACTCTGACTTCGGTGAGTTTCTCTTTTTTGTGTGTGATTTATCT
AATAGTCTACTAG

Translation (820 aa):
MGGSCAQRRRAGPRQVLFPLLLPLFYPTLSEPIRYSIPEELAKGSVVGNLAKDLGLSVLDVSARKLRVSA
EKLHFSVDAESGDLLVKNRIDREQICKERRRCELQLEAVVENPLNIFHVIVVIEDVNDHAPQFDKKEIHL
EIFESASAGTRLSLDPATDPDININSIKDYKINSNPYFSLMVRVNSDGGKYPELSLEKLLDREEQRSHSL
ILTALDGGDPPRSATAHIEISVKDTNDNPPVFSRDEYRISLSENLPPGSPVLQVTATDQDEGVNAEINYY
FRSTAQSTKHMFSLDEKTGMIKNNQSFDFEDVERYTMEVEAKDGGGLSTQCKVIIEILDENDNSPEIIIT
SLSDQILENSPPGMVVALFKTRDLDFGGNGEVRCNIETDIPFKIYSSSNNYYKLVTDGALDREQTPEYNV
TIVATDRGKPPLSSSRSITLYVADINDNAPVFDQTSYVVHVAENNPPGASIAQVSASDPDLGLNGHISYS
IVASDLEPLAVSSYVSVSAQSGVVFAQRAFDHEQLRAFALTLQARDHGSPTLSANVSLRVLVGDRNDNAP
RVLYPALGPDGSAFFDMVPRSAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTAR
ALGDRDAARQRLLVAVRDGGQPPLSATATLHLVFADNLQEILPDLSDRPVLSDPQAELQFYLVVALALIS
VLFLLAVILAIALRLRRSLSPATWDCFHPGLCVKSGPVVPPNYSEGTLPYSYNLCIAHTGTKEFNFLKCS
VPLHSNEDMVCSVSPGALIPPHGGEDLTSHPETLTSVSFSFLCVIYLIVY


Links Key
 Links to:   History report
  BLAST report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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