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Report for CCDS75332.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75332.1 Public Homo sapiens 5 PCDHGB2 24 110 108 CCDS HistoryNCBI Gene:56103Re-query CCDS DB by CCDS ID:75332.1Re-query CCDS DB by GeneID:56103See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75332.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622527.1 ENSP00000481512.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622527.1Link to Ensembl Protein Viewer:ENSP00000481512.1Re-query CCDS DB by Nucleotide ID:ENST00000622527Re-query CCDS DB by Protein ID:ENSP00000481512
Original member Current member NCBI NM_032096.1 NP_115267.1 Accepted alive Link to Nucleotide Sequence:NM_032096.1Link to Protein Sequence:NP_115267.1Re-query CCDS DB by Nucleotide ID:NM_032096Re-query CCDS DB by Protein ID:NP_115267Link to BLAST:NP_115267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115267.1 811 Q9Y5G2-2 811 100% 0 0

Chromosomal Locations for CCDS 75332.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141360136 141362571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2436 nt):
ATGAAAGCGAGCTCAGGGAGGTGCGGGCTGGTGCGGTGGCTGCAGGTACTGTTGCCCTTCCTGTTGTCTT
TGTTCCCCGGGGCTCTCCCAGTCCAGATCCGCTATTCAATTCCAGAGGAGCTGGCCAAAAACTCGGTCGT
AGGAAACCTCGCCAAGGATCTGGGGCTCAGCGTCCGGGACTTGCCAGCCCGGAAGCTGCGGGTTAGCGCG
GAGAAGGAATATTTCACAGTAAACCCAGAAAGCGGAGACTTACTTGTGAGTGACAGAATAGACCGAGAAC
AGATATGCGGGAAGCAGCCTCTGTGTGTTCTGGATTTCGATACTGTCGCTGAAAATCCACTAAATATTTT
CTACATAGCAGTAATTGTGCAGGATATAAATGATAATACCCCGCTATTCAAACAGACTAAGATTAATTTA
AAAATTGGCGAATCCACTAAGCCAGGTACAACATTTCCACTTGACCCAGCCCTGGATTCAGATGTTGGTC
CTAACTCACTACAAAGATACCACCTTAATGACAACGAGTACTTTGATCTCGCTGAGAAACAGACTCCAGA
TGGTCGTAAATATCCTGAGTTGATTCTAAAACACTCTCTGGACAGAGAAGAGCACAGTTTACATCAATTG
GTCCTCACAGCTGTGGATGGCGGAGACCCACCTCAAAGTGGCACGACCCAAATCCGAATCAAAGTCACGG
ATGCCAACGATAACCCTCCAGTGTTCAGCCAGGACGTGTACAGGGTCACCCTGAGGGAGGACGTGCCGCC
GGGCTTCTTTGTGCTTCAAGTGACAGCCACCGACCGGGATGAAGGCATAAACGCAGAGATCACCTACTCC
TTTCATAATGTGGACGAACAAGTGAAACACTTTTTCAACTTAAATGAAAAAACAGGAGAAATCACGACAA
AGGATGATTTGGATTTTGAGATTGCAAGTAGTTACACTCTGAGTATCGAAGCAAAAGATCCTGGAGATCT
AGCAGCCCACTGCAGTATCCAAGTTGAAATTCTTGATGACAACGATTGTGCACCTGAAGTTATTGTGACT
TCAGTATCTACTCCCCTACCGGAGGATTCGCCACCAGGAACAGTGATCGCCTTGATAAAAACGAGAGACA
GAGACTCTGGAGAAAATGGAGAAGTTTACTGCCAAGTGTTGGGAAATGCCAAGTTTATTTTGAAATCTTC
CTCAAAGAACTATTACAAACTAGTGACAGACGGCGCTCTGGACCGGGAGGAGATCCCAGAATACAATCTC
ACCATCACAGCCACCGACGGGGGCAAGCCGCCCCTCTCCTCCAGCATAATTGTCACCCTGCACATCTCCG
ACGTCAACGATAATGCCCCAGTTTTCCAACAGACTTCCTACATGGTTCACGTGGCAGAGAACAATCCTCC
TGGCGCCTCTATCGCTCAAATCAGTGCCTCTGACCCTGACTTGGGCCCCAGTGGCCAAGTTTCCTACTCC
ATCGTAGCGAGCGACCTGAAGCCGCGGGAGATTTTATCCTACGTGTCCGTGAGCGCGCAGAGCGGGGTGG
TGTTCGCGCAGCGCGCCTTCGATCATGAGCAGCTGCGCGCCTTCGAGCTCACACTGCAGGCCCGCGACCA
GGGCTCGCCCGCGCTCAGCGCCAACGTGAGCCTGCGCGTGTTAGTGGGCGACCTCAATGACAATGCGCCA
CGGGTGCTGTACCCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGCGCCGCAGAGC
CCGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACACAACGCTTGGCTGTCCTACCA
CGTGCTGCAGGCCAGCGAGCCCGGGCTCTTCAGCCTGGGGTTGCGCACGGGTGAGGTGCGCACAGCGCGT
GCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGGTCGCTGTGCGTGATGGAGGACAGCCGCCAC
TCTCCGCTACGGCCACGCTGCACCTAATCTTCGCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGA
CCGCCGGGAGCCCTCTGACCCCCAGGCAAAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCA
GTGCTCTTCTTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTGCGACTCTCTTCCAGGTCAGATGCTT
GGGACTGTTTTCAGCCTGGTCTCAGCTCCAAGCCTGGACCTGGGGTTCTCCCCAATTACAGTGAGGGTAC
ATTGCCCTATTCCTACAACCTGTGTGTTGCCTCACAATCAGCCAAGACAGAGTTCAATTTTCTGAACATA
ACCCCGGAATTGGTTCCCGCGCAAGATCTCGTCTGTGACAATGCCTCTTGGGAACAAAATACAAATCATG
GAGCCGCTGGGGTCCCTTTTGCCTCAGATACTATTTTGAAGGTGAGCTTTAATTAA

Translation (811 aa):
MKASSGRCGLVRWLQVLLPFLLSLFPGALPVQIRYSIPEELAKNSVVGNLAKDLGLSVRDLPARKLRVSA
EKEYFTVNPESGDLLVSDRIDREQICGKQPLCVLDFDTVAENPLNIFYIAVIVQDINDNTPLFKQTKINL
KIGESTKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPDGRKYPELILKHSLDREEHSLHQL
VLTAVDGGDPPQSGTTQIRIKVTDANDNPPVFSQDVYRVTLREDVPPGFFVLQVTATDRDEGINAEITYS
FHNVDEQVKHFFNLNEKTGEITTKDDLDFEIASSYTLSIEAKDPGDLAAHCSIQVEILDDNDCAPEVIVT
SVSTPLPEDSPPGTVIALIKTRDRDSGENGEVYCQVLGNAKFILKSSSKNYYKLVTDGALDREEIPEYNL
TITATDGGKPPLSSSIIVTLHISDVNDNAPVFQQTSYMVHVAENNPPGASIAQISASDPDLGPSGQVSYS
IVASDLKPREILSYVSVSAQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSANVSLRVLVGDLNDNAP
RVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWLSYHVLQASEPGLFSLGLRTGEVRTAR
ALGDRDAARQRLLVAVRDGGQPPLSATATLHLIFADSLQEVLPDLSDRREPSDPQAKLQFYLVVALALIS
VLFFLAVILAISLRLRLSSRSDAWDCFQPGLSSKPGPGVLPNYSEGTLPYSYNLCVASQSAKTEFNFLNI
TPELVPAQDLVCDNASWEQNTNHGAAGVPFASDTILKVSFN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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