NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7532.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7532.1 Public Homo sapiens 10 PITX3 24 110 108 CCDS HistoryNCBI Gene:5309Re-query CCDS DB by CCDS ID:7532.1Re-query CCDS DB by GeneID:5309See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7532.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370002.8 ENSP00000359019.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370002.8Link to Ensembl Protein Viewer:ENSP00000359019.3Re-query CCDS DB by Nucleotide ID:ENST00000370002Re-query CCDS DB by Protein ID:ENSP00000359019
Original member Current member EBI ENST00000539804.1 ENSP00000439383.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539804.1Link to Ensembl Protein Viewer:ENSP00000439383.1Re-query CCDS DB by Nucleotide ID:ENST00000539804Re-query CCDS DB by Protein ID:ENSP00000439383
Original member Current member NCBI NM_005029.4 NP_005020.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005029.4Link to Protein Sequence:NP_005020.1Re-query CCDS DB by Nucleotide ID:NM_005029Re-query CCDS DB by Protein ID:NP_005020Link to BLAST:NP_005020.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005020.1 302 O75364 302 100% 0 0

Chromosomal Locations for CCDS 7532.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 102230514 102231101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102231588 102231790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 102231963 102232080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (909 nt):
ATGGAGTTCGGCCTGCTCAGCGAGGCAGAGGCCCGGAGCCCTGCCCTGTCGCTGTCAGACGCTGGCACTC
CGCACCCCCAGCTCCCAGAGCACGGCTGCAAGGGCCAGGAGCACAGCGACTCAGAAAAGGCCTCGGCTTC
GCTGCCCGGCGGCTCCCCAGAGGACGGTTCGCTGAAAAAGAAGCAGCGGCGGCAGCGCACGCACTTCACC
AGCCAGCAGCTACAGGAGCTAGAGGCGACCTTCCAGAGGAACCGCTACCCCGACATGAGCACGCGCGAGG
AGATCGCCGTGTGGACCAACCTCACCGAGGCCCGCGTGCGGGTGTGGTTCAAGAACCGGCGCGCCAAATG
GCGGAAGCGCGAGCGCAGCCAGCAGGCCGAGCTATGCAAAGGCAGCTTCGCGGCGCCGCTCGGGGGGCTG
GTGCCGCCCTACGAGGAGGTGTACCCCGGCTACTCGTACGGCAACTGGCCGCCCAAGGCTCTTGCCCCGC
CGCTCGCCGCCAAGACCTTTCCATTCGCCTTCAACTCGGTCAACGTGGGGCCTCTGGCTTCGCAGCCCGT
CTTCTCGCCACCCAGCTCCATCGCCGCCTCCATGGTGCCCTCCGCCGCGGCTGCCCCGGGCACCGTGCCA
GGGCCTGGGGCCCTGCAGGGCCTGGGCGGGGGCCCCCCCGGGCTGGCTCCGGCCGCCGTGTCCTCCGGGG
CCGTGTCCTGCCCTTATGCCTCGGCCGCCGCCGCCGCCGCGGCTGCCGCCTCTTCCCCCTACGTCTATCG
GGACCCGTGTAACTCGAGCCTGGCCAGCCTGCGGCTCAAAGCCAAACAGCACGCCTCCTTCAGCTACCCC
GCTGTGCACGGGCCGCCCCCGGCAGCCAACCTTAGTCCGTGCCAGTACGCCGTGGAAAGGCCCGTATGA

Translation (302 aa):
MEFGLLSEAEARSPALSLSDAGTPHPQLPEHGCKGQEHSDSEKASASLPGGSPEDGSLKKKQRRQRTHFT
SQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRERSQQAELCKGSFAAPLGGL
VPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVNVGPLASQPVFSPPSSIAASMVPSAAAAPGTVP
GPGALQGLGGGPPGLAPAAVSSGAVSCPYASAAAAAAAAASSPYVYRDPCNSSLASLRLKAKQHASFSYP
AVHGPPPAANLSPCQYAVERPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH