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Report for CCDS75261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75261.1 Public Homo sapiens 5 SV2C 24 110 108 CCDS HistoryNCBI Gene:22987Re-query CCDS DB by CCDS ID:75261.1Re-query CCDS DB by GeneID:22987See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75261.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322285.7 ENSP00000316983.7 Accepted alive Link to Ensembl Transcript Viewer:ENST00000322285.7Link to Ensembl Protein Viewer:ENSP00000316983.7Re-query CCDS DB by Nucleotide ID:ENST00000322285Re-query CCDS DB by Protein ID:ENSP00000316983
Original member Current member NCBI NM_001297716.2 NP_001284645.1 Accepted alive Link to Nucleotide Sequence:NM_001297716.2Link to Protein Sequence:NP_001284645.1Re-query CCDS DB by Nucleotide ID:NM_001297716Re-query CCDS DB by Protein ID:NP_001284645Link to BLAST:NP_001284645.1

Chromosomal Locations for CCDS 75261.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76131751 76132330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76194919 76195099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76209736 76209887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76285162 76285295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76285781 76285870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76291221 76291331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76291768 76291856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76295778 76295942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76298794 76298927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76300729 76300932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76301386 76301545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76353130 76353160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2031 nt):
ATGGAAGACTCTTACAAGGATAGGACTTCACTGATGAAGGGTGCCAAGGACATTGCCAGAGAGGTGAAGA
AACAAACAGTAAAGAAGGTGAATCAAGCTGTGGACCGAGCCCAGGATGAATACACCCAGAGGTCCTACAG
TCGGTTCCAAGATGAAGAAGATGATGATGACTACTACCCGGCTGGAGAAACCTATAATGGTGAGGCCAAC
GATGACGAAGGCTCAAGTGAAGCCACTGAGGGGCATGATGAAGATGATGAGATCTATGAGGGGGAGTATC
AGGGCATCCCCAGTATGAACCAAGCGAAGGACAGCATCGTGTCAGTGGGGCAGCCCAAGGGCGATGAGTA
CAAGGACCGGCGGGAGCTGGAATCAGAAAGGAGAGCTGACGAGGAAGAGTTAGCCCAGCAGTATGAGCTG
ATAATCCAAGAATGCGGTCATGGTCGTTTTCAGTGGGCCCTTTTCTTCGTCCTGGGCATGGCTCTTATGG
CAGACGGTGTAGAGGTGTTTGTCGTTGGCTTCGTGTTACCCAGTGCTGAGACAGACCTCTGCATCCCAAA
TTCAGGATCTGGATGGCTAGGCAGCATAGTGTACCTCGGGATGATGGTGGGGGCGTTCTTCTGGGGAGGA
CTGGCAGACAAAGTGGGAAGGAAACAGTCTCTTCTGATTTGCATGTCTGTCAACGGATTCTTTGCCTTCC
TTTCTTCATTTGTCCAAGGTTATGGCTTCTTTCTCTTCTGTCGCTTACTTTCTGGATTCGGGATTGGAGG
AGCCATACCCACTGTGTTCTCGTACTTTGCTGAAGTCCTGGCCCGGGAAAAGCGGGGCGAACACTTGAGC
TGGCTCTGCATGTTCTGGATGATCGGTGGCATCTACGCCTCTGCCATGGCCTGGGCCATCATCCCGCACT
ACGGGTGGAGCTTCAGCATGGGATCGGCCTACCAGTTTCACAGTTGGCGTGTGTTTGTCATCGTCTGTGC
ACTCCCCTGTGTCTCCTCCGTGGTGGCCCTCACATTCATGCCTGAAAGCCCACGATTCTTGTTGGAGGTT
GGAAAACATGATGAAGCTTGGATGATTCTGAAGTTAATTCATGACACCAACATGAGAGCCCGGGGTCAGC
CTGAGAAGGTCTTCACGGTAAACAAAATAAAAACTCCTAAACAAATAGATGAGCTGATTGAAATTGAGAG
TGACACAGGAACATGGTATAGGAGGTGTTTTGTTCGGATCCGCACCGAGCTGTACGGAATTTGGTTGACT
TTTATGAGATGTTTCAACTACCCAGTCAGGGATAATACAATAAAGCTTACAATTGTTTGGTTCACCCTGT
CCTTTGGGTACTATGGATTATCCGTTTGGTTCCCTGATGTCATTAAACCTCTGCAGTCCGATGAATATGC
ATTGCTAACCAGAAATGTGGAGAGAGATAAATATGCAAATTTCACTATTAACTTTACAATGGAAAATCAG
ATTCATACTGGAATGGAATACGACAATGGCAGATTCATAGGGGTCAAGTTCAAATCTGTAACTTTCAAAG
ACTCTGTTTTTAAGTCCTGCACCTTTGAGGATGTAACTTCAGTGAACACCTACTTCAAGAACTGCACATT
TATTGACACTGTTTTTGACAACACAGATTTTGAGCCATATAAATTCATTGACAGTGAATTTAAAAACTGC
TCGTTTTTTCACAACAAGACGGGATGTCAGATTACCTTTGATGATGACTATAGTGCCTACTGGATTTATT
TTGTCAACTTTCTGGGGACATTGGCAGTATTGCCAGGGAACATTGTGTCTGCTCTGCTGATGGACAGAAT
TGGGCGCTTAACAATGCTAGGTGGCTCTATGGTGCTTTCGGGGATCAGCTGTTTCTTCCTTTGGTTCGGC
ACCAGTGAATCCATGATGATAGGCATGCTGTGTCTGTACAATGGATTGACCATCTCAGCCTGGAACTCTC
TTGACGTGGTCACTGTGGAACTGTACCCCACAGACCGGAGACGCAGAGTCTTGCCATGTTGCCCCGGCTG
A

Translation (676 aa):
MEDSYKDRTSLMKGAKDIAREVKKQTVKKVNQAVDRAQDEYTQRSYSRFQDEEDDDDYYPAGETYNGEAN
DDEGSSEATEGHDEDDEIYEGEYQGIPSMNQAKDSIVSVGQPKGDEYKDRRELESERRADEEELAQQYEL
IIQECGHGRFQWALFFVLGMALMADGVEVFVVGFVLPSAETDLCIPNSGSGWLGSIVYLGMMVGAFFWGG
LADKVGRKQSLLICMSVNGFFAFLSSFVQGYGFFLFCRLLSGFGIGGAIPTVFSYFAEVLAREKRGEHLS
WLCMFWMIGGIYASAMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEV
GKHDEAWMILKLIHDTNMRARGQPEKVFTVNKIKTPKQIDELIEIESDTGTWYRRCFVRIRTELYGIWLT
FMRCFNYPVRDNTIKLTIVWFTLSFGYYGLSVWFPDVIKPLQSDEYALLTRNVERDKYANFTINFTMENQ
IHTGMEYDNGRFIGVKFKSVTFKDSVFKSCTFEDVTSVNTYFKNCTFIDTVFDNTDFEPYKFIDSEFKNC
SFFHNKTGCQITFDDDYSAYWIYFVNFLGTLAVLPGNIVSALLMDRIGRLTMLGGSMVLSGISCFFLWFG
TSESMMIGMLCLYNGLTISAWNSLDVVTVELYPTDRRRRVLPCCPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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