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Report for CCDS75255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75255.1 Public Homo sapiens 5 CCDC125 24 110 108 CCDS HistoryNCBI Gene:202243Re-query CCDS DB by CCDS ID:75255.1Re-query CCDS DB by GeneID:202243See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000511257.1 ENSP00000426795.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000511257.1Link to Ensembl Protein Viewer:ENSP00000426795.1Re-query CCDS DB by Nucleotide ID:ENST00000511257Re-query CCDS DB by Protein ID:ENSP00000426795
Original member Current member NCBI NM_001297697.2 NP_001284626.1 Accepted alive Link to Nucleotide Sequence:NM_001297697.2Link to Protein Sequence:NP_001284626.1Re-query CCDS DB by Nucleotide ID:NM_001297697Re-query CCDS DB by Protein ID:NP_001284626Link to BLAST:NP_001284626.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284626.1 386 Q86Z20-2 386 100% 0 0

Chromosomal Locations for CCDS 75255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 69282729 69283034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69285337 69285467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69292188 69292362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69294793 69294900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69300012 69300127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69303847 69303929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69306817 69306902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69307951 69308028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 69311118 69311195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGTTAAAAACTGAACTTGAGGCATCTCAAAGACAACTCAGAGGTAAAGAGGAAGCATTGAAAATTCTTC
AAAGCATGGCAATACTGGGCAAAGCCACAAGTCATACGCAGGCAGTGCTTCAAAAAACTATGGAACAAAA
CAGATCCTTGGAGAAGGAAATAAATGCCTTGCAGTGGGAAATAGAATTTGATCATAATAGATTTAAAAAT
ATAGAGGAATCTTGGATCCAAAAATATGACAGGCTAAACTGTGAAAATGCAGTCCTCAAAGAGAATTTGA
AAGTGAAAACAGAAGAAATTAAAATGCTGAAGTCTGACAATGCAGTTTTGAATCAACGGTATTTGGAGGC
CCTCGCCATGCTTGATATCAAACAGCAGAAGATGGCTCAGGAAAACATGTGCTGTGATAAAAGTGGCTTT
GCAGAGGCTTCAGGTCTTGAGCTTGCGGTCCTCGGAGCCTGCCTTTGTCATGGGCCCGGAGGGAACCCCT
GTTCTTGTGCCAGAATGGCAGCATCCACTCGGAAACTGCTTCTTCAGCTCAAACAAGAGTTGGAAATTTT
GCAGAAGAGTAAAGAAGAAGCTTACGTGATGGCAGATGCTTTCAGAATTGCATTTGAGCAACAATTAATG
AGAAAAAATGACCAGGCACTACAATTGACACAAATGGATAAAATGCATAAAAAAGCAACAAAATGGATGA
ATTGGAAGCACCTTAAAGAGGATGGATTTCCATCACCAAGGAGTAAGAAGACCTTCGGGCAGAGACTGTT
GGGTATGCTCCCTTCAGAAAACAGTTCTAAGAGGATGGAAGACCAGGACAGTCCTCAAGAGGTCCTTAAG
ATGCTCATAGATTTGCTTAATGATAAAGAAGAAGCTTTGGCTCATCAAAGAAAAGTTAGCTACATGCTTG
CTCGGGCATTGGAAGACAAAGACACTGCTTCAAACGAGAATAAAGAAAAAAATCCTATAAAAGAGAATTT
CCCTTTCAACAACCCCTGGCGTAAGACTTCAGAATTCTCTGTTTTGGGTGATCCTATACATTCAAGTGTC
TGCATTTTAAATTCTGTGGGCTGCATTTGTTCAATCCAGCACTCTCAAATAGATCCAAACTATAGAACTC
TTAAAAGATCCCATTCTTTGCCATCAAGTATCATATTTTAA

Translation (386 aa):
MLKTELEASQRQLRGKEEALKILQSMAILGKATSHTQAVLQKTMEQNRSLEKEINALQWEIEFDHNRFKN
IEESWIQKYDRLNCENAVLKENLKVKTEEIKMLKSDNAVLNQRYLEALAMLDIKQQKMAQENMCCDKSGF
AEASGLELAVLGACLCHGPGGNPCSCARMAASTRKLLLQLKQELEILQKSKEEAYVMADAFRIAFEQQLM
RKNDQALQLTQMDKMHKKATKWMNWKHLKEDGFPSPRSKKTFGQRLLGMLPSENSSKRMEDQDSPQEVLK
MLIDLLNDKEEALAHQRKVSYMLARALEDKDTASNENKEKNPIKENFPFNNPWRKTSEFSVLGDPIHSSV
CILNSVGCICSIQHSQIDPNYRTLKRSHSLPSSIIF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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