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Report for CCDS75232.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75232.1 Public Homo sapiens 5 SLC45A2 24 110 108 CCDS HistoryNCBI Gene:51151Re-query CCDS DB by CCDS ID:75232.1Re-query CCDS DB by GeneID:51151See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75232.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509381.1 ENSP00000421100.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509381.1Link to Ensembl Protein Viewer:ENSP00000421100.1Re-query CCDS DB by Nucleotide ID:ENST00000509381Re-query CCDS DB by Protein ID:ENSP00000421100
Original member Current member NCBI NM_001297417.4 NP_001284346.2 Accepted alive Link to Nucleotide Sequence:NM_001297417.4Link to Protein Sequence:NP_001284346.2Re-query CCDS DB by Nucleotide ID:NM_001297417Re-query CCDS DB by Protein ID:NP_001284346Link to BLAST:NP_001284346.2

Chromosomal Locations for CCDS 75232.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 33951652 33951677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33954361 33954504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33982236 33982412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 33984199 33984583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGGTAGCAACAGTGGGCAGGCTGGCCGCCACATCTATAAATCCCTAGCTGATGATGGCCCCTTTGACT
CTGTGGAGCCGCCTAAAAGACCCACCAGCAGACTCATCATGCACAGCATGGCCATGTTCGGAAGAGAGTT
CTGCTACGCGGTGGAGGCAGCGTATGTGACCCCAGTCCTGCTCAGCGTAGGTCTGCCCAGCAGCCTGTAC
AGCATTGTGTGGTTCCTCAGCCCCATCCTGGGATTCCTGCTGCAGCCCGTGGTCGGATCGGCCAGCGACC
ACTGCCGGTCCAGGTGGGGCCGCCGGAGACCCTACATCCTCACCCTGGGAGTCATGATGCTCGTGGGCAT
GGCTCTGTACCTCAATGGGGCTACTGTTGTAGCAGCTTTGATTGCTAACCCAAGGAGGAAGCTGGTTTGG
GCCATAAGTGTCACCATGATAGGTGTCGTTCTCTTTGATTTTGCTGCCGACTTCATTGATGGGCCCATCA
AAGCCTACTTATTTGATGTCTGCTCCCATCAGGACAAGGAGAAGGGCCTCCACTACCATGCCCTCTTCAC
AGACTCGCAGGGCAATGACATTAAAGTCACTGCTGAGAGCACTGGTGAACATGCCTCCTCACTACCGCTA
CCTTTGCATCAGCCACCTCATTGGATGGACAGCCTTCCTGTCCAACATGCTGTTCTTCACAGATTTCATG
GGCCAGATTGTGTACCGCGGGGATCCCTATAG

Translation (243 aa):
MGSNSGQAGRHIYKSLADDGPFDSVEPPKRPTSRLIMHSMAMFGREFCYAVEAAYVTPVLLSVGLPSSLY
SIVWFLSPILGFLLQPVVGSASDHCRSRWGRRRPYILTLGVMMLVGMALYLNGATVVAALIANPRRKLVW
AISVTMIGVVLFDFAADFIDGPIKAYLFDVCSHQDKEKGLHYHALFTDSQGNDIKVTAESTGEHASSLPL
PLHQPPHWMDSLPVQHAVLHRFHGPDCVPRGSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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