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Report for CCDS75219.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75219.1 Public Homo sapiens 4 PDLIM3 24 110 108 CCDS HistoryNCBI Gene:27295Re-query CCDS DB by CCDS ID:75219.1Re-query CCDS DB by GeneID:27295See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75219.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000620787.5 ENSP00000481771.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620787.5Link to Ensembl Protein Viewer:ENSP00000481771.2Re-query CCDS DB by Nucleotide ID:ENST00000620787Re-query CCDS DB by Protein ID:ENSP00000481771
Original member Current member NCBI NM_001257962.2 NP_001244891.1 Accepted alive Link to Nucleotide Sequence:NM_001257962.2Link to Protein Sequence:NP_001244891.1Re-query CCDS DB by Nucleotide ID:NM_001257962Re-query CCDS DB by Protein ID:NP_001244891Link to BLAST:NP_001244891.1

Chromosomal Locations for CCDS 75219.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 185502294 185502483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185504475 185504586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185506522 185506652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185514270 185514337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185523362 185523446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185525020 185525171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 185535342 185535434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGCCCCAGACGGTGATCCTCCCGGGCCCTGCGCCCTGGGGCTTCAGGCTCTCAGGGGGCATAGACTTCA
ACCAGCCTTTGGTCATCACCAGGATTACACCAGGAAGCAAGGCGGCAGCTGCCAACCTGTGTCCTGGAGA
TGTCATCCTGGCTATTGACGGCTTTGGGACAGAGTCCATGACTCATGCTGATGCGCAGGACAGGATTAAA
GCAGCAGCTCACCAGCTGTGTCTCAAAATTGACAGGGGAGAAACTCACTTATGGTCTCCACAAGTATCTG
AAGATGGGAAAGCCCATCCTTTCAAAATCAACTTAGAATCAGAACCACAGGACGGGAACTACTTTGAACA
CAAGCATAATATTCGGCCCAAACCTTTCGTGATCCCGGGCCGAAGCAGCGAGCCCACAGCCTCGGTGCCC
CCCGAGTCGGACGTGTACCGGATGCTCCACGACAATCGGAATGAGCCCACACAGCCTCGCCAGTCGGGCT
CCTTCAGAGTGCTCCAGGGAATGGTGGACGATGGCTCTGATGACCGTCCGGCTGGAACGCGGAGTGTGAG
AGCTCCGGTGACGAAAGTCCATGGCGGTTCAGGCGGGGCACAGAGGATGCCGCTCTGTGACAAATGTGGG
AGTGGCATAGTCGGTGCTGTGGTGAAGGCGCGGGATAAGTACCGGCACCCTGAGTGCTTCGTGTGTGCCG
ACTGCAACCTCAACCTCAAGCAAAAGGGCTACTTCTTCATAGAAGGGGAGCTGTACTGCGAAACCCACGC
AAGAGCCCGCACAAAGCCCCCAGAGGGCTATGACACGGTCACTCTGTATCCCAAAGCTTAA

Translation (276 aa):
MPQTVILPGPAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK
AAAHQLCLKIDRGETHLWSPQVSEDGKAHPFKINLESEPQDGNYFEHKHNIRPKPFVIPGRSSEPTASVP
PESDVYRMLHDNRNEPTQPRQSGSFRVLQGMVDDGSDDRPAGTRSVRAPVTKVHGGSGGAQRMPLCDKCG
SGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFFIEGELYCETHARARTKPPEGYDTVTLYPKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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