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Report for CCDS75173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75173.1 Public Homo sapiens 4 SLC9B2 24 110 108 CCDS HistoryNCBI Gene:133308Re-query CCDS DB by CCDS ID:75173.1Re-query CCDS DB by GeneID:133308See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 75173.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503103.5 ENSP00000425385.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503103.5Link to Ensembl Protein Viewer:ENSP00000425385.1Re-query CCDS DB by Nucleotide ID:ENST00000503103Re-query CCDS DB by Protein ID:ENSP00000425385
Original member Current member NCBI NM_001300756.2 NP_001287685.1 Accepted alive Link to Nucleotide Sequence:NM_001300756.2Link to Protein Sequence:NP_001287685.1Re-query CCDS DB by Nucleotide ID:NM_001300756Re-query CCDS DB by Protein ID:NP_001287685Link to BLAST:NP_001287685.1
Original member Current member NCBI NM_001370205.1 NP_001357134.1 Accepted alive Link to Nucleotide Sequence:NM_001370205.1Link to Protein Sequence:NP_001357134.1Re-query CCDS DB by Nucleotide ID:NM_001370205Re-query CCDS DB by Protein ID:NP_001357134Link to BLAST:NP_001357134.1

Chromosomal Locations for CCDS 75173.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 103026422 103026591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103031700 103031808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103043296 103043445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103044890 103044996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103047051 103047226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103048893 103049020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103050240 103050382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103066327 103066507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 103067461 103067550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGGGGGATGAAGATAAAAGAATTACATATGAAGATTCAGAACCATCCACAGGAATGAATTACACGCCCT
CCATGCATCAAGAAGCACAGGAGGAGACAGTTATGAAGCTCAAAGGTATAGATGCAAATGAACCAACAGA
AGGAAGTATTCTTTTGAAAAGCAGTGAAAAAAAGCTACAAGAAACACCAACTGAAGCAAATCACGTACAA
AGACTGAGACAAATGCTGGCTTGCCCTCCACATGGTTTACTGGACAGGGTCATAACAAATGGCATGCTGC
TTGCAGGGTTTCTCATCAGAAATATCCCAGTCATCAACGATAATGTGCAGATCAAGCACAAGTGGTCTTC
CTCTTTGAGAAGCATAGCCCTGTCTATCATTCTGGTTCGTGCTGGCCTTGGTCTGGATTCAAAGGCCCTG
AAGAAGTTAAAGGGCGTTTGTGTAAGACTGTCCATGGGTCCCTGTATTGTGGAGGCGTGCACATCTGCTC
TTCTTGCCCATTACCTGCTGGGTTTACCATGGCAATGGGGATTTATACTGGGTTTTGTTTTAGGTGCTGT
ATCTCCAGCTGTTGTGGTGCCTTCAATGCTCCTTTTGCAGGGAGGAGGCTATGGTGTTGAGAAGGGTGTC
CCAACCTTGCTCATGGCAGCTGGCAGCTTCGATGACATTCTGGCCATCACTGGCTTCAACACATGCTTGG
GCATAGCCTTTTCCACAGGCTCTACTGTCTTTAATGTCCTCAGAGGAGTTTTGGAGGTGGTAATTGGTGT
GGCAACTGGATCTGTTCTTGGATTTTTCATTCAGTACTTTCCAAGCCGTGACCAGGACAAACTTGTGTGT
AAGAGAACATTCCTTGTGTTGGGGTTGTCTGTGCTAGCTGTGTTCAGCAGTGTGCATTTTGGTTTCCCTG
GATCAGGAGGACTGTGCACGTTGGTCATGGCTTTCCTTGCAGGCATGGGATGGACCAGCGAAAAGGCAGA
GGTTGAAAAGATAATTGCAGTTGCCTGGGACATTTTTCAGCCCCTTCTTTTTGGACTAATTGGAGCAGAG
GTATCTATTGCATCTCTCAGACCAGAAACTGTAGGCTGCAATAGGATCTGTGGCTTTGGACACAGCAAGG
TCACATGGAGAGAAACAATTAGAAGACTATGGAATGGATGTGTTGACAGTGGCATTTTTGTCCATCCTCA
TCACAGCCCCAATTGGAAGTCTGCTTATTGGTTTACTGGGCCCCAGGCTTCTGCAGAAAGTTGA

Translation (417 aa):
MGDEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANEPTEGSILLKSSEKKLQETPTEANHVQ
RLRQMLACPPHGLLDRVITNGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKAL
KKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGV
PTLLMAAGSFDDILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVC
KRTFLVLGLSVLAVFSSVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAE
VSIASLRPETVGCNRICGFGHSKVTWRETIRRLWNGCVDSGIFVHPHHSPNWKSAYWFTGPQASAES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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