NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS74944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74944.1 Public Homo sapiens 3 DCAF1 24 110 108 CCDS HistoryNCBI Gene:9730Re-query CCDS DB by CCDS ID:74944.1Re-query CCDS DB by GeneID:9730See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000504652.5 ENSP00000421724.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000504652.5Link to Ensembl Protein Viewer:ENSP00000421724.2Re-query CCDS DB by Nucleotide ID:ENST00000504652Re-query CCDS DB by Protein ID:ENSP00000421724
Original member Current member NCBI NM_001171904.2 NP_001165375.1 Accepted alive Link to Nucleotide Sequence:NM_001171904.2Link to Protein Sequence:NP_001165375.1Re-query CCDS DB by Nucleotide ID:NM_001171904Re-query CCDS DB by Protein ID:NP_001165375Link to BLAST:NP_001165375.1
Original member Current member NCBI NM_001387582.1 NP_001374511.1 Accepted alive Link to Nucleotide Sequence:NM_001387582.1Link to Protein Sequence:NP_001374511.1Re-query CCDS DB by Nucleotide ID:NM_001387582Re-query CCDS DB by Protein ID:NP_001374511Link to BLAST:NP_001374511.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165375.1 1506 Q9Y4B6-2 1506 100% 0 0
NP_001374511.1 1506 Q9Y4B6-2 1506 100% 0 0

Chromosomal Locations for CCDS 74944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51398769 51398827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51403143 51403395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51412379 51412480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51412993 51413066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51413282 51413386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51413950 51414043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51414624 51414857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51416787 51416871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51418116 51418198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51418678 51418876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51419734 51420997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51422307 51422431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51427372 51427541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51429261 51429470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51430033 51430212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51433106 51433264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51440970 51441071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51441385 51441897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51443766 51443903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51463114 51463227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51466806 51466876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51470929 51471005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51483719 51483828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4521 nt):
ATGACTACAGTAGTGGTACATGTGGACTCCAAAGCTGAGCTCACTACCCTGCTGGAGCAGTGGGAAAAGG
AACATGGCAGTGGGCAGGACATGGTACCTATCCTTACCAGGATGTCTCAATTGATTGAAAAAGAAACTGA
AGAGTATCGTAAAGGGGATCCAGACCCATTTGATGATCGACATCCTGGTCGAGCTGATCCAGAGTGTATG
CTGGGCCACTTGCTGAGAATACTCTTCAAGAATGATGATTTCATGAATCTGGTGAATGCATATGTGATGA
CAAGCCGAGAGCCCCCTTTAAACACTGCAGCTTGCAGACTCCTATTAGACATCATGCCAGGGCTGGAAAC
TGCTGTCGTCTTTCAAGAAAAGGAGGGAATTGTCGAGAATCTTTTCAAATGGGCCCGAGAGGCCGATCAA
CCATTGAGGACATATTCTACTGGACTGTTAGGAGGTGCTATGGAAAATCAAGACATTGCTGCCAACTATA
GAGATGAAAATTCACAGCTGGTGGCAATAGTGCTTCGAAGACTGAGGGAGCTACAGCTACAGGAAGTGGC
TTTGCGGCAGGAAAACAAGCGTCCCAGTCCACGGAAGCTCTCTTCTGAACCCCTTTTGCCTCTGGATGAG
GAGGCTGTGGATATGGACTATGGTGACATGGCTGTAGATGTAGTGGATGGAGACCAAGAGGAAGCTTCTG
GAGACATGGAGATCTCCTTTCATCTTGATTCAGGCCACAAGACTAGTAGCAGAGTGAACTCAACAACCAA
ACCTGAGGATGGAGGATTAAAGAAAAACAAGTCAGCAAAACAGGGTGACAGAGAGAACTTTAGGAAAGCC
AAGCAAAAGTTGGGTTTCTCATCTTCTGATCCAGATCGCATGTTTGTTGAGCTGTCTAATAGCAGTTGGT
CAGAAATGTCTCCCTGGGTGATTGGCACCAATTATACCCTTTATCCTATGACTCCTGCTATCGAGCAGCG
ACTCATTCTCCAATATTTGACCCCTCTAGGAGAATATCAGGAGCTACTTCCCATATTCATGCAACTTGGA
TCACGGGAGCTGATGATGTTCTATATTGACCTGAAGCAAACTAATGATGTCCTGCTTACATTTGAGGCAC
TAAAGCACCTAGCATCTCTCCTGCTCCATAACAAATTTGCCACAGAATTTGTTGCGCATGGTGGAGTACA
GAAATTACTGGAAATACCTCGTCCTTCTATGGCTGCAACCGGTGTGTCTATGTGTTTGTATTACCTATCC
TACAATCAGGATGCCATGGAAAGAGTTTGCATGCATCCCCACAATGTTCTGTCTGATGTGGTGAACTATA
CCCTGTGGTTAATGGAGTGTTCTCATGCTTCAGGATGCTGCCATGCTACCATGTTTTTTTCAATTTGCTT
CTCATTTCGGGCCGTCTTGGAGCTCTTTGACCGCTATGATGGTCTTCGTCGTCTGGTGAACTTGATCAGT
ACTTTGGAGATTCTAAATTTGGAAGATCAGGGTGCACTTCTGAGTGATGATGAAATATTTGCTAGCCGCC
AAACTGGGAAACATACCTGCATGGCCTTGCGCAAATACTTTGAGGCTCACCTGGCCATTAAATTGGAACA
AGTGAAGCAGTCACTTCAGAGGACTGAGGGTGGCATTCTTGTCCACCCACAACCCCCGTACAAGGCATGC
TCATATACTCATGAACAGATTGTGGAAATGATGGAATTTTTGATAGAATATGGCCCAGCGCAGCTATATT
GGGAACCAGCTGAAGTTTTCCTCAAACTTTCTTGTGTGCAACTCTTGTTGCAGCTTATTTCTATTGCCTG
CAATTGGAAGACCTATTATGCAAGGAATGACACTGTGCGCTTTGCTTTGGATGTCCTGGCTATTCTTACT
GTGGTGCCAAAAATCCAGCTCCAGTTGGCAGAATCAGTGGACGTGTTGGATGAGGCTGGATCTACAGTCT
CTACTGTAGGTATCAGCATTATTTTGGGAGTGGCTGAGGGTGAGTTCTTCATCCATGATGCTGAAATTCA
GAAGTCAGCACTTCAGATTATCATCAATTGTGTGTGTGGCCCAGATAACCGAATATCCAGTATTGGTAAA
TTTATCTCTGGTACTCCTCGGAGAAAGCTGCCTCAGAACCCTAAAAGCAGTGAGCACACCCTGGCCAAGA
TGTGGAATGTGGTTCAGTCCAACAACGGCATCAAGGTGCTCCTGTCCTTACTGTCCATTAAGATGCCCAT
CACAGATGCAGACCAAATCCGGGCCCTGGCCTGCAAAGCCCTAGTGGGCCTGTCTCGCAGTAGCACTGTC
CGGCAGATCATCAGTAAACTGCCCCTTTTCAGCAGCTGCCAGATCCAGCAGCTGATGAAGGAGCCTGTGC
TGCAGGACAAGCGCAGTGACCATGTCAAGTTCTGCAAGTATGCTGCTGAACTCATTGAACGGGTGTCAGG
AAAACCACTTCTCATTGGCACTGATGTTTCCCTAGCACGACTGCAGAAAGCAGATGTTGTTGCCCAGTCA
AGGATCTCCTTCCCTGAGAAAGAGCTGCTTTTGTTGATACGAAACCATCTTATTTCTAAAGGGCTTGGAG
AAACAGCAACCGTGCTGACAAAAGAGGCTGACCTGCCCATGACTGCTGCCTCCCATTCTTCTGCCTTTAC
CCCAGTCACTGCTGCTGCTTCTCCTGTCTCTCTACCCCGAACCCCTCGTATCGCTAATGGCATTGCAACT
CGTCTGGGCAGCCATGCTGCTGTGGGTGCCTCTGCGCCTTCTGCCCCTACTGCTCATCCTCAGCCACGGC
CCCCCCAGGGTCCGCTAGCTCTGCCCGGCCCATCTTATGCAGGCAACTCCCCTTTGATTGGTAGAATCAG
TTTTATCAGAGAGAGGCCATCACCCTGCAATGGCAGGAAAATCAGAGTGTTGCGGCAGAAGTCGGACCAT
GGTGCCTACAGCCAAAGCCCAGCCATAAAAAAACAGCTGGACAGACATCTTCCTTCCCCACCTACGCTGG
ACAGTATAATCACAGAGTATCTTAGAGAACAACATGCTCGCTGCAAGAATCCAGTTGCCACCTGCCCACC
TTTCTCCCTCTTTACTCCTCACCAATGTCCTGAGCCAAAACAGAGGCGGCAAGCGCCAATAAACTTTACG
TCAAGGCTAAACCGCAGGGCATCATTTCCAAAGTATGGAGGGGTGGATGGCGGATGCTTTGATAGGCACC
TTATCTTTAGCAGATTCCGTCCTATTTCAGTGTTCCGGGAAGCCAATGAAGATGAGAGTGGCTTCACCTG
CTGTGCATTCTCAGCACGGGAGCGGTTCCTGATGCTTGGCACCTGCACAGGGCAGCTGAAGCTCTATAAT
GTGTTTAGTGGACAGGAGGAGGCCAGCTATAACTGTCACAACTCAGCCATCACACATCTTGAACCTTCCA
GGGATGGGTCCTTGCTGCTGACATCTGCTACTTGGAGCCAGCCTTTGTCTGCACTTTGGGGAATGAAGTC
AGTATTTGATATGAAGCATTCCTTCACAGAAGATCACTATGTTGAGTTCAGTAAGCACTCCCAGGATCGG
GTCATCGGCACAAAAGGAGACATTGCCCACATTTATGATATTCAGACTGGCAACAAGCTGTTGACTCTGT
TTAACCCAGATCTTGCCAACAACTACAAGAGGAACTGTGCCACCTTTAATCCTACAGATGATCTTGTCTT
AAATGATGGCGTCCTCTGGGATGTCCGCTCTGCACAGGCCATCCACAAGTTTGACAAGTTCAATATGAAC
ATCAGTGGTGTTTTCCATCCAAATGGACTGGAGGTGATCATTAATACTGAGATTTGGGACCTTCGAACTT
TTCATCTTTTGCATACTGTTCCCGCTCTGGATCAGTGTCGCGTGGTGTTCAATCACACGGGAACAGTGAT
GTATGGAGCTATGTTGCAGGCAGATGATGAAGATGACTTAATGGAAGAGAGGATGAAAAGCCCCTTTGGG
TCATCCTTCCGAACATTTAATGCAACTGACTACAAACCTATAGCAACCATTGATGTGAAACGGAACATCT
TTGACCTGTGTACAGACACCAAAGACTGCTATCTTGCTGTCATTGAGAATCAAGGCAGCATGGATGCCCT
GAACATGGACACAGTATGCAGGCTGTATGAAGTGGGCAGGCAGCGTCTGGCAGAGGATGAGGATGAAGAG
GAGGACCAGGAAGAGGAAGAACAGGAGGAAGAAGATGATGATGAAGATGATGATGACACCGATGATTTAG
ATGAGCTTGACACTGACCAGTTGCTGGAGGCGGAGTTGGAGGAGGACGACAATAATGAGAACGCAGGGGA
AGATGGGGACAATGACTTCTCTCCCTCTGATGAGGAGCTAGCAAACCTTCTAGAGGAGGGAGAGGACGGG
GAGGATGAAGACTCTGATGCAGATGAGGAGGTGGAACTGATCCTGGGGGACACTGACAGCTCTGACAACT
CTGATTTGGAAGATGACATCATCTTATCTCTGAATGAGTGA

Translation (1506 aa):
MTTVVVHVDSKAELTTLLEQWEKEHGSGQDMVPILTRMSQLIEKETEEYRKGDPDPFDDRHPGRADPECM
LGHLLRILFKNDDFMNLVNAYVMTSREPPLNTAACRLLLDIMPGLETAVVFQEKEGIVENLFKWAREADQ
PLRTYSTGLLGGAMENQDIAANYRDENSQLVAIVLRRLRELQLQEVALRQENKRPSPRKLSSEPLLPLDE
EAVDMDYGDMAVDVVDGDQEEASGDMEISFHLDSGHKTSSRVNSTTKPEDGGLKKNKSAKQGDRENFRKA
KQKLGFSSSDPDRMFVELSNSSWSEMSPWVIGTNYTLYPMTPAIEQRLILQYLTPLGEYQELLPIFMQLG
SRELMMFYIDLKQTNDVLLTFEALKHLASLLLHNKFATEFVAHGGVQKLLEIPRPSMAATGVSMCLYYLS
YNQDAMERVCMHPHNVLSDVVNYTLWLMECSHASGCCHATMFFSICFSFRAVLELFDRYDGLRRLVNLIS
TLEILNLEDQGALLSDDEIFASRQTGKHTCMALRKYFEAHLAIKLEQVKQSLQRTEGGILVHPQPPYKAC
SYTHEQIVEMMEFLIEYGPAQLYWEPAEVFLKLSCVQLLLQLISIACNWKTYYARNDTVRFALDVLAILT
VVPKIQLQLAESVDVLDEAGSTVSTVGISIILGVAEGEFFIHDAEIQKSALQIIINCVCGPDNRISSIGK
FISGTPRRKLPQNPKSSEHTLAKMWNVVQSNNGIKVLLSLLSIKMPITDADQIRALACKALVGLSRSSTV
RQIISKLPLFSSCQIQQLMKEPVLQDKRSDHVKFCKYAAELIERVSGKPLLIGTDVSLARLQKADVVAQS
RISFPEKELLLLIRNHLISKGLGETATVLTKEADLPMTAASHSSAFTPVTAAASPVSLPRTPRIANGIAT
RLGSHAAVGASAPSAPTAHPQPRPPQGPLALPGPSYAGNSPLIGRISFIRERPSPCNGRKIRVLRQKSDH
GAYSQSPAIKKQLDRHLPSPPTLDSIITEYLREQHARCKNPVATCPPFSLFTPHQCPEPKQRRQAPINFT
SRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTGQLKLYN
VFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFSKHSQDR
VIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKFDKFNMN
ISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQADDEDDLMEERMKSPFG
SSFRTFNATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEVGRQRLAEDEDEE
EDQEEEEQEEEDDDEDDDDTDDLDELDTDQLLEAELEEDDNNENAGEDGDNDFSPSDEELANLLEEGEDG
EDEDSDADEEVELILGDTDSSDNSDLEDDIILSLNE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH