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Report for CCDS74900.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74900.1 Public Homo sapiens 3 SYN2 24 110 108 CCDS HistoryNCBI Gene:6854Re-query CCDS DB by CCDS ID:74900.1Re-query CCDS DB by GeneID:6854See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74900.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621198.5 ENSP00000480050.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621198.5Link to Ensembl Protein Viewer:ENSP00000480050.1Re-query CCDS DB by Nucleotide ID:ENST00000621198Re-query CCDS DB by Protein ID:ENSP00000480050
Original member Current member NCBI NM_133625.6 NP_598328.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_133625.6Link to Protein Sequence:NP_598328.1Re-query CCDS DB by Nucleotide ID:NM_133625Re-query CCDS DB by Protein ID:NP_598328Link to BLAST:NP_598328.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598328.1 582 Q92777-1 582 100% 0 0

Chromosomal Locations for CCDS 74900.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 12004552 12004928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12140651 12140708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12141905 12141996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12145679 12145835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12151237 12151326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12161546 12161608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12162012 12162154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12167234 12167308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12168376 12168478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12169757 12169906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12183312 12183372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12187369 12187612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 12190490 12190625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGATGAACTTCCTGCGGCGCCGGCTGTCGGACAGCAGCTTCATCGCCAACCTGCCCAACGGCTACATGA
CCGACCTGCAGCGGCCCGAGCCCCAGCAGCCGCCGCCGCCGCCGCCCCCCGGTCCGGGCGCCGCCTCGGC
CTCGGCGGCGCCCCCGACCGCCTCGCCGGGCCCGGAGCGGAGGCCGCCGCCCGCCTCGGCGCCCGCGCCG
CAGCCCGCGCCGACGCCGTCGGTGGGCAGCAGCTTCTTCAGCTCGCTGTCCCAAGCCGTGAAGCAGACGG
CCGCCTCGGCTGGCCTGGTGGACGCGCCCGCTCCCGCGCCCGCAGCCGCCAGGAAGGCCAAGGTGCTGCT
GGTGGTCGACGAGCCGCACGCCGACTGGGCCAAGTGCTTTCGGGGCAAAAAAGTCCTTGGAGATTATGAT
ATCAAGGTGGAACAGGCAGAATTTTCAGAGCTCAACCTGGTGGCCCATGCAGATGGCACCTATGCTGTGG
ATATGCAGGTTCTCCGGAATGGCACAAAGGTTGTCCGGTCCTTCCGGCCAGACTTCGTGCTCATCCGGCA
GCATGCATTTGGCATGGCGGAGAATGAGGACTTCCGCCACCTGATCATTGGTATGCAGTATGCAGGCCTC
CCCAGCATCAACTCACTGGAATCCATATACAACTTCTGTGACAAGCCATGGGTGTTTGCCCAGCTGGTCG
CTATCTATAAGACACTGGGAGGAGAAAAGTTCCCTCTCATTGAACAGACATACTACCCCAACCACAAAGA
GATGCTGACACTGCCCACGTTCCCTGTGGTGGTGAAGATTGGCCACGCTCACTCAGGCATGGGCAAGGTC
AAAGTGGAAAACCACTACGACTTCCAGGACATTGCCAGCGTGGTGGCTCTCACCCAGACCTATGCCACTG
CAGAGCCTTTCATTGACTCCAAGTATGACATCCGGGTCCAGAAGATTGGCAACAACTACAAGGCTTACAT
GAGGACATCGATCTCAGGGAACTGGAAGACGAACACTGGCTCTGCGATGCTGGAGCAGATTGCCATGTCA
GACAGGTACAAACTGTGGGTGGACACCTGCTCTGAGATGTTTGGCGGCCTGGACATCTGTGCTGTCAAAG
CTGTACATGGCAAAGATGGGAAAGACTACATTTTTGAGGTCATGGACTGTAGCATGCCACTGATTGGGGA
ACATCAGGTGGAGGACAGGCAACTCATCACCGAACTAGTCATCAGCAAGATGAACCAGCTGCTGTCCAGG
ACTCCTGCCCTGTCTCCTCAGAGACCCCTAACAACCCAGCAGCCACAGAGCGGAACACTTAAGGATCCGG
ACTCAAGCAAGACCCCACCTCAGCGGCCACCCCCTCAAGGGGGCCCTGGGCAACCCCAAGGAATGCAGCC
CCCAGGCAAGGTGCTGCCTCCACGCCGGCTCCCCCCTGGACCATCACTGCCACCTTCCTCCTCTTCCTCC
TCTTCTTCCTCCTCCTCGGCTCCTCAGCGGCCGGGCGGCCCCACCACCCACGGAGATGCACCCTCCAGCA
GCAGCTCCCTGGCAGAGGCCCAGCCACCCCTGGCTGCTCCACCACAGAAGCCCCAGCCTCACCCACAGCT
CAACAAGTCGCAGTCCCTGACAAATGCCTTCAGCTTCTCTGAGTCCTCCTTCTTCCGGTCTTCAGCCAAT
GAGGATGAAGCCAAAGCAGAGACCATCCGGAGCTTGAGGAAGTCCTTTGCCAGCCTCTTTTCAGATTAG

Translation (582 aa):
MMNFLRRRLSDSSFIANLPNGYMTDLQRPEPQQPPPPPPPGPGAASASAAPPTASPGPERRPPPASAPAP
QPAPTPSVGSSFFSSLSQAVKQTAASAGLVDAPAPAPAAARKAKVLLVVDEPHADWAKCFRGKKVLGDYD
IKVEQAEFSELNLVAHADGTYAVDMQVLRNGTKVVRSFRPDFVLIRQHAFGMAENEDFRHLIIGMQYAGL
PSINSLESIYNFCDKPWVFAQLVAIYKTLGGEKFPLIEQTYYPNHKEMLTLPTFPVVVKIGHAHSGMGKV
KVENHYDFQDIASVVALTQTYATAEPFIDSKYDIRVQKIGNNYKAYMRTSISGNWKTNTGSAMLEQIAMS
DRYKLWVDTCSEMFGGLDICAVKAVHGKDGKDYIFEVMDCSMPLIGEHQVEDRQLITELVISKMNQLLSR
TPALSPQRPLTTQQPQSGTLKDPDSSKTPPQRPPPQGGPGQPQGMQPPGKVLPPRRLPPGPSLPPSSSSS
SSSSSSAPQRPGGPTTHGDAPSSSSSLAEAQPPLAAPPQKPQPHPQLNKSQSLTNAFSFSESSFFRSSAN
EDEAKAETIRSLRKSFASLFSD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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