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Report for CCDS74868.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74868.1 Public Homo sapiens 22 SLC25A17 24 110 108 CCDS HistoryNCBI Gene:10478Re-query CCDS DB by CCDS ID:74868.1Re-query CCDS DB by GeneID:10478See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74868.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000544408.5 ENSP00000438355.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000544408.5Link to Ensembl Protein Viewer:ENSP00000438355.2Re-query CCDS DB by Nucleotide ID:ENST00000544408Re-query CCDS DB by Protein ID:ENSP00000438355
Original member Current member NCBI NM_001282727.2 NP_001269656.1 Accepted alive Link to Nucleotide Sequence:NM_001282727.2Link to Protein Sequence:NP_001269656.1Re-query CCDS DB by Nucleotide ID:NM_001282727Re-query CCDS DB by Protein ID:NP_001269656Link to BLAST:NP_001269656.1

Chromosomal Locations for CCDS 74868.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 40770834 40770981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40773937 40774019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40777040 40777135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40777228 40777373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40779009 40779125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40799023 40799083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 40819195 40819248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (705 nt):
ATGGCTTCCGTGCTGTCCTACGAAAGCCTGGTCCACGCCGTGGCCGGAGCCGTGGGAAGCGTGACAGCAA
TGACAGTGTTTTTTCCCCTGGATACAGCTAGACTTCGACTTCAGGGAGTGGTTAATGTGTTGCTAACAAC
TCCACTCTGGGTGGTAAACACCAGACTGAAGCTTCAAGGAGCAAAATTTAGGAATGAAGACATTGTACCA
ACAAACTACAAAGGTATCATTGATGCTTTTCATCAGATCATTCGCGATGAAGGAATCTCGGCTTTATGGA
ATGGCACATTTCCCTCATTGCTGTTGGTCTTCAATCCTGCCATCCAGTTCATGTTTTATGAAGGTTTAAA
ACGGCAGCTTTTAAAGAAACGGATGAAGCTTTCTTCCTTGGATGTGTTCATCATTGGTGCAGTAGCCAAA
GCGATTGCCACCACGGTGACCTATCCCCTGCAGACGGTACAGTCAATTCTGAGGTTTGGGCGTCATAGAC
TAAACCCAGAAAACAGAACATTGGGAAGTCTTCGGAATATTCTCTATCTTCTTCACCAACGAGTAAGACG
TTTTGGAATAATGGGACTCTACAAAGGCCTTGAAGCCAAACTGCTGCAGACAGTCCTCACTGCTGCTCTC
ATGTTCCTTGTTTATGAGAAACTGACAGCTGCCACCTTCACAGTTATGGGGCTGAAGCGTGCACACCAAC
ACTGA

Translation (234 aa):
MASVLSYESLVHAVAGAVGSVTAMTVFFPLDTARLRLQGVVNVLLTTPLWVVNTRLKLQGAKFRNEDIVP
TNYKGIIDAFHQIIRDEGISALWNGTFPSLLLVFNPAIQFMFYEGLKRQLLKKRMKLSSLDVFIIGAVAK
AIATTVTYPLQTVQSILRFGRHRLNPENRTLGSLRNILYLLHQRVRRFGIMGLYKGLEAKLLQTVLTAAL
MFLVYEKLTAATFTVMGLKRAHQH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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