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Report for CCDS74725.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74725.1 Public Homo sapiens 20 GDAP1L1 24 110 108 CCDS HistoryNCBI Gene:78997Re-query CCDS DB by CCDS ID:74725.1Re-query CCDS DB by GeneID:78997See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74725.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000537864.5 ENSP00000440498.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537864.5Link to Ensembl Protein Viewer:ENSP00000440498.2Re-query CCDS DB by Nucleotide ID:ENST00000537864Re-query CCDS DB by Protein ID:ENSP00000440498
Original member Current member NCBI NM_001256737.2 NP_001243666.1 Accepted alive Link to Nucleotide Sequence:NM_001256737.2Link to Protein Sequence:NP_001243666.1Re-query CCDS DB by Nucleotide ID:NM_001256737Re-query CCDS DB by Protein ID:NP_001243666Link to BLAST:NP_001243666.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001243666.1 386 Q96MZ0-4 386 100% 0 0

Chromosomal Locations for CCDS 74725.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 44247335 44247514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44257153 44257345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44258377 44258607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44263230 44263327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44264445 44264559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 44278957 44279300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGCGACCCCCAACAATCTGACCCCCACCAACTGCAGCTGGTGGCCCATCTCCGCGCTGGAGAGCGATG
CGGCCAAGCCAGCGGAGGCCCCCGACGCTCCCGAGGCGGCCAGCCCCGCCCATTGGCCCAGGGAGAGCCT
GGTTCTGTACCACTGGACCCAGTCCTTCAGCTCGCAGAAGGTGCGGCTGGTGATCGCCGAGAAGGGCCTG
GTGTGCGAGGAGCGGGACGTGAGCCTGCCACAGAGCGAGCACAAGGAGCCCTGGTTCATGCGGCTCAACC
TGGGCGAGGAGGTGCCCGTCATCATCCACCGCGACAACATCATCAGTGACTATGACCAGATCATTGACTA
TGTGGAGCGCACCTTCACAGGAGGTGGCCGGGGCAGGTGCCCCTCTGGCTTCCCTGCCCAGCCCCTGGCG
GTGCCCACAGAGCACGTGGTGGCCCTGATGCCCGAGGTGGGCAGCCTGCAGCACGCACGGGTGCTGCAGT
ACCGGGAGCTGCTGGACGCACTGCCCATGGATGCCTACACGCATGGCTGCATCCTGCATCCCGAGCTCAC
CACCGACTCCATGATCCCCAAGTACGCCACGGCCGAGATCCGCAGACATTTAGCCAATGCCACCACGGAC
CTCATGAAACTGGACCATGAAGAGGAGCCCCAGCTCTCCGAGCCCTACCTTTCTAAACAAAAGAAGCTCA
TGGCCAAGATCTTGGAGCATGATGATGTGAGCTACCTGAAGAAGATCCTCGGGGAACTGGCCATGGTGCT
GGACCAGATTGAGGCGGAGCTGGAGAAGAGGAAGCTGGAGAACGAGGGGCAGAAATGCGAGCTGTGGCTC
TGTGGCTGTGCCTTCACCCTCGCTGATGTCCTCCTGGGAGCCACCCTGCACCGCCTCAAGTTCCTGGGAC
TGTCCAAGAAATACTGGGAAGATGGCAGCCGGCCCAACCTGCAGTCCTTCTTTGAGAGGGTCCAGAGACG
CTTTGCCTTCCGGAAAGTCCTGGGTGACATCCACACCACCCTGCTGTCGGCCGTCATCCCCAATGCTTTC
CGGCTGGTCAAGAGGAAACCCCCATCCTTCTTCGGGGCGTCCTTCCTCATGGGCTCCCTGGGTGGGATGG
GCTACTTTGCCTACTGGTACCTCAAGAAAAAATACATCTAG

Translation (386 aa):
MATPNNLTPTNCSWWPISALESDAAKPAEAPDAPEAASPAHWPRESLVLYHWTQSFSSQKVRLVIAEKGL
VCEERDVSLPQSEHKEPWFMRLNLGEEVPVIIHRDNIISDYDQIIDYVERTFTGGGRGRCPSGFPAQPLA
VPTEHVVALMPEVGSLQHARVLQYRELLDALPMDAYTHGCILHPELTTDSMIPKYATAEIRRHLANATTD
LMKLDHEEEPQLSEPYLSKQKKLMAKILEHDDVSYLKKILGELAMVLDQIEAELEKRKLENEGQKCELWL
CGCAFTLADVLLGATLHRLKFLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDIHTTLLSAVIPNAF
RLVKRKPPSFFGASFLMGSLGGMGYFAYWYLKKKYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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