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Report for CCDS74583.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74583.1 Public Homo sapiens 2 GTDC1 24 110 108 CCDS HistoryNCBI Gene:79712Re-query CCDS DB by CCDS ID:74583.1Re-query CCDS DB by GeneID:79712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 74583.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000618778.4 ENSP00000484990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618778.4Link to Ensembl Protein Viewer:ENSP00000484990.1Re-query CCDS DB by Nucleotide ID:ENST00000618778Re-query CCDS DB by Protein ID:ENSP00000484990
Original member Current member NCBI NM_001284238.3 NP_001271167.1 Accepted alive Link to Nucleotide Sequence:NM_001284238.3Link to Protein Sequence:NP_001271167.1Re-query CCDS DB by Nucleotide ID:NM_001284238Re-query CCDS DB by Protein ID:NP_001271167Link to BLAST:NP_001271167.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271167.1 426 Q4AE62-5 426 100% 0 0

Chromosomal Locations for CCDS 74583.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143947052 143947135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143951982 143952073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952773 143952843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143957195 143957339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143970653 143970762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144007182 144007535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144141882 144142055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144145572 144145739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144177135 144177217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGTTGACTCTTCATGTCTGGATATGGTTTGGATTTATGCCTTGCCCAAATCTCATGCAGAATTATAATC
ACCAATGTTGCAGGACCCTCTTTGCAAGTTCAGTGCTTAACCTGACCGAACTGGCTGCCCTTCGGCCTGA
CCTTGGGAAACTGAAAAAGATTCTGTATTTTCACGAGAACCAGTTGATATATCCTGTCAAGAAATGTCAG
GAGAGGGATTTCCAATATGGATACAACCAAATTCTTTCATGCCTGGTGGCTGATGTGGTTGTATTCAACT
CAGTTTTTAATATGGAATCATTTCTCACTTCCATGGGAAAATTTATGAAGCTGATTCCTGATCACAGACC
CAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTTACTTTCCCATCAGGTTTCCTGATGTG
AGCAGATTCATGCCCAAGCACAAAACAACCCATTTAAAGAAGATGCTCGGCCTTAAAGGAAATGGCGGTG
CGGTTCTGTCCATGGCCCTTCCTTTTCAGCCAGAGCAGAGAGATTCAGAGGATTTATTGAAGAATTTTAA
TTCAGAGTGTGATACACACTGTGGCCTTGATACTGCACGACAAGAATATTTGGGTAACTCATTAAGACAG
GAATCAGACTTGAAAAAATCCACCTCGTCAGATAATTCAAGCTCTCATCATGGTGAAAATAAACAAAATC
TGACTGTTGATCCCTGTGACATTTTGGGTGGAGTTGATAATCAGCAAAGACTGCTACACATTGTCTGGCC
TCACAGGTGGGAGCATGATAAAGATCCAGAAAGCTTTTTTAAGGTATTAATGCATCTTAAAGACTTAGGA
CTCAATTTCCACGTGTCTGTACTTGGAGAAACCTTCACAGATGTCCCAGATATTTTTTCAGAGGCCAAAA
AGGCATTGGGATCTTCTGTCTTACACTGGGGCTACTTACCCAGCAAAGATGACTATTTCCAAGTACTGTG
CATGGCTGATGTTGTCATCTCAACAGCTAAGCATGAATTCTTTGGAGTGGCAATGTTGGAAGCTGTGTAC
TGTGGGTGTTACCCACTTTGTCCTAAAGATTTGGTTTATCCCGAAATATTTCCAGCTGAATATCTGTATT
CTACACCTGAACAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGACCAGATATTATAAGAAAACATCT
CTATAAGGGTGAAATCGCTCCGTTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTTACAACA
GAACCTAGGGAAGATTTGTGA

Translation (426 aa):
MLTLHVWIWFGFMPCPNLMQNYNHQCCRTLFASSVLNLTELAALRPDLGKLKKILYFHENQLIYPVKKCQ
ERDFQYGYNQILSCLVADVVVFNSVFNMESFLTSMGKFMKLIPDHRPKDLESIIRPKCQVIYFPIRFPDV
SRFMPKHKTTHLKKMLGLKGNGGAVLSMALPFQPEQRDSEDLLKNFNSECDTHCGLDTARQEYLGNSLRQ
ESDLKKSTSSDNSSSHHGENKQNLTVDPCDILGGVDNQQRLLHIVWPHRWEHDKDPESFFKVLMHLKDLG
LNFHVSVLGETFTDVPDIFSEAKKALGSSVLHWGYLPSKDDYFQVLCMADVVISTAKHEFFGVAMLEAVY
CGCYPLCPKDLVYPEIFPAEYLYSTPEQLSKRLQNFCKRPDIIRKHLYKGEIAPFSWAALHGKFRSLLTT
EPREDL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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