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Report for CCDS74582.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74582.1 Public Homo sapiens 2 GTDC1 24 110 108 CCDS HistoryNCBI Gene:79712Re-query CCDS DB by CCDS ID:74582.1Re-query CCDS DB by GeneID:79712See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74582.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000463875.6 ENSP00000437964.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000463875.6Link to Ensembl Protein Viewer:ENSP00000437964.1Re-query CCDS DB by Nucleotide ID:ENST00000463875Re-query CCDS DB by Protein ID:ENSP00000437964
Original member Current member NCBI NM_001284234.3 NP_001271163.1 Accepted alive Link to Nucleotide Sequence:NM_001284234.3Link to Protein Sequence:NP_001271163.1Re-query CCDS DB by Nucleotide ID:NM_001284234Re-query CCDS DB by Protein ID:NP_001271163Link to BLAST:NP_001271163.1
Original member Current member NCBI NM_001354351.2 NP_001341280.1 Accepted alive Link to Nucleotide Sequence:NM_001354351.2Link to Protein Sequence:NP_001341280.1Re-query CCDS DB by Nucleotide ID:NM_001354351Re-query CCDS DB by Protein ID:NP_001341280Link to BLAST:NP_001341280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271163.1 329 Q4AE62-6 329 100% 0 0
NP_001341280.1 329 Q4AE62-6 329 100% 0 0

Chromosomal Locations for CCDS 74582.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143947052 143947135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143951982 143952073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143952773 143952843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143957195 143957339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143970653 143970762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144007182 144007535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 144141882 144142015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAATCATTTCTCACTTCCATGGGAAAATTTATGAAGCTGATTCCTGATCACAGACCCAAGGATCTGG
AAAGCATCATCAGACCCAAGTGCCAAGTTATTTACTTTCCCATCAGGTTTCCTGATGTGAGCAGATTCAT
GCCCAAGCACAAAACAACCCATTTAAAGAAGATGCTCGGCCTTAAAGGAAATGGCGGTGCGGTTCTGTCC
ATGGCCCTTCCTTTTCAGCCAGAGCAGAGAGATTCAGAGGATTTATTGAAGAATTTTAATTCAGAGTGTG
ATACACACTGTGGCCTTGATACTGCACGACAAGAATATTTGGGTAACTCATTAAGACAGGAATCAGACTT
GAAAAAATCCACCTCGTCAGATAATTCAAGCTCTCATCATGGTGAAAATAAACAAAATCTGACTGTTGAT
CCCTGTGACATTTTGGGTGGAGTTGATAATCAGCAAAGACTGCTACACATTGTCTGGCCTCACAGGTGGG
AGCATGATAAAGATCCAGAAAGCTTTTTTAAGGTATTAATGCATCTTAAAGACTTAGGACTCAATTTCCA
CGTGTCTGTACTTGGAGAAACCTTCACAGATGTCCCAGATATTTTTTCAGAGGCCAAAAAGGCATTGGGA
TCTTCTGTCTTACACTGGGGCTACTTACCCAGCAAAGATGACTATTTCCAAGTACTGTGCATGGCTGATG
TTGTCATCTCAACAGCTAAGCATGAATTCTTTGGAGTGGCAATGTTGGAAGCTGTGTACTGTGGGTGTTA
CCCACTTTGTCCTAAAGATTTGGTTTATCCCGAAATATTTCCAGCTGAATATCTGTATTCTACACCTGAA
CAGCTTTCAAAAAGGCTCCAGAATTTCTGCAAGAGACCAGATATTATAAGAAAACATCTCTATAAGGGTG
AAATCGCTCCGTTTTCTTGGGCAGCCCTACATGGTAAATTCAGGTCTCTGCTTACAACAGAACCTAGGGA
AGATTTGTGA

Translation (329 aa):
MESFLTSMGKFMKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKTTHLKKMLGLKGNGGAVLS
MALPFQPEQRDSEDLLKNFNSECDTHCGLDTARQEYLGNSLRQESDLKKSTSSDNSSSHHGENKQNLTVD
PCDILGGVDNQQRLLHIVWPHRWEHDKDPESFFKVLMHLKDLGLNFHVSVLGETFTDVPDIFSEAKKALG
SSVLHWGYLPSKDDYFQVLCMADVVISTAKHEFFGVAMLEAVYCGCYPLCPKDLVYPEIFPAEYLYSTPE
QLSKRLQNFCKRPDIIRKHLYKGEIAPFSWAALHGKFRSLLTTEPREDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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