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Report for CCDS74308.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74308.1 Public Homo sapiens 19 SIN3B 24 110 108 CCDS HistoryNCBI Gene:23309Re-query CCDS DB by CCDS ID:74308.1Re-query CCDS DB by GeneID:23309See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74308.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248054.10 ENSP00000248054.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000248054.10Link to Ensembl Protein Viewer:ENSP00000248054.4Re-query CCDS DB by Nucleotide ID:ENST00000248054Re-query CCDS DB by Protein ID:ENSP00000248054
Original member Current member NCBI NM_001297595.2 NP_001284524.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001297595.2Link to Protein Sequence:NP_001284524.1Re-query CCDS DB by Nucleotide ID:NM_001297595Re-query CCDS DB by Protein ID:NP_001284524Link to BLAST:NP_001284524.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001284524.1 1130 O75182-2 1130 100% 0 0

Chromosomal Locations for CCDS 74308.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16829421 16829540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16829791 16829897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16831494 16831647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16841768 16841968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16846970 16847113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16851412 16851534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16853069 16853158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16854143 16854261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16862352 16862559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16863680 16863796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16865410 16865648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16866373 16866556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16869460 16870075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16871229 16871398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16876055 16876228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16876486 16876578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16877545 16877639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16878183 16878390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16878497 16878727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGGCGCACGCTGGCGGTGGCAGCGGTGGCAGCGGTGCCGGCGGCCCCGCGGGCCGGGGGCTGAGCGGCG
CCCGCTGGGGTCGCTCGGGCTCCGCAGGCCACGAGAAGCTGCCGGTGCACGTAGAAGACGCCCTCACCTA
TCTGGACCAGGTGAAGATCCGCTTTGGCAGCGACCCTGCCACCTACAACGGCTTCCTGGAGATCATGAAG
GAGTTCAAAAGCCAGAGCATCGATACTCCTGGAGTCATCAGACGTGTCTCGCAGCTCTTCCACGAGCACC
CTGACCTCATTGTTGGATTCAACGCTTTTCTTCCCCTCGGATATAGAATAGACATTCCCAAGAATGGCAA
GTTAAACATACAGTCGCCTCTGACAAGCCAGGAGAATTCGCACAACCACGGGGACGGTGCAGAGGACTTC
AAGCAGCAGGTGCCGTATAAAGAGGACAAACCCCAGGTGCCCCTGGAGTCCGATTCCGTGGAATTCAACA
ACGCCATCAGCTATGTGAATAAGATTAAAACCCGCTTCCTAGACCACCCAGAAATCTACAGGTCATTCCT
GGAGATCCTGCACACGTACCAGAAGGAGCAGCTGAACACGAGGGGCCGGCCATTCCGAGGCATGTCTGAA
GAGGAGGTGTTCACCGAGGTGGCCAACCTCTTCCGGGGCCAGGAGGACCTGCTCTCAGAGTTTGGACAGT
TCCTGCCCGAAGCCAAGCGGTCTCTGTTCACAGGAAACGGGCCGTGCGAGATGCACAGCGTGCAGAAGAA
CGAGCACGACAAGACCCCGGAGCACAGCAGGAAGCGCTCCCGGCCCTCGCTCCTCCGCCCCGTGTCTGCA
CCCGCCAAGAAAAAAATGAAACTTCGTGGTACCAAAGACCTGTCCATCGCTGCAGTGGGGAAGTACGGGA
CTCTGCAGGAATTTTCTTTCTTTGACAAGGTCCGCCGGGTGCTGAAGAGCCAGGAGGTGTATGAAAACTT
CCTCCGCTGCATCGCACTCTTCAACCAGGAGCTGGTGTCTGGCTCTGAGCTCCTGCAGCTCGTCAGCCCA
TTTCTGGGGAAATTTCCAGAACTCTTTGCACAGTTCAAGTCCTTCCTGGGGGTAAAAGAGCTGTCCTTCG
CGCCACCCATGAGCGACAGATCCGGGGACGGGATAAGCCGGGAAATTGATTATGCATCCTGCAAGCGCAT
AGGATCCAGCTACCGGGCACTCCCCAAAACCTACCAGCAGCCCAAGTGCAGTGGGAGGACAGCCATCTGC
AAGGAGGTACTGAACGACACCTGGGTCTCCTTCCCTTCCTGGTCTGAGGACTCCACGTTCGTCAGCTCCA
AGAAGACACCGTACGAGGAGCAGCTTCACCGCTGTGAGGACGAGCGCTTCGAGTTAGACGTTGTCCTGGA
GACGAACCTGGCCACAATCCGTGTGTTGGAAAGTGTGCAGAAGAAGCTGTCTCGGATGGCGCCGGAAGAC
CAGGAGAAGTTCCGGCTGGACGACTCCCTGGGAGGCACGTCGGAGGTGATCCAGCGCCGTGCCATTTATC
GCATCTATGGCGACAAGGCCCCGGAGATCATCGAGAGCCTCAAGAAGAACCCTGTCACCGCTGTCCCCGT
TGTCCTGAAAAGACTGAAGGCCAAGGAAGAGGAGTGGCGGGAGGCCCAGCAGGGCTTCAACAAGATCTGG
CGGGAGCAGTATGAGAAGGCGTACCTCAAGTCCCTTGACCACCAGGCTGTGAACTTCAAGCAGAACGACA
CCAAGGCCCTGCGCTCCAAGAGCTTGCTCAACGAGATCGAGAGCGTCTACGACGAGCACCAGGAGCAGCA
CTCGGAGGGCCGCAGTGCCCCCTCTAGCGAGCCGCACCTCATCTTTGTGTACGAGGACCGGCAGATCCTG
GAGGACGCAGCAGCGCTCATCAGCTACTACGTGAAGCGGCAGCCGGCCATCCAGAAGGAGGACCAGGGCA
CCATCCACCAGCTGCTGCACCAGTTCGTGCCCAGCCTCTTCTTCTCTCAGCAGCTGGACCTGGGCGCCTC
CGAGGAGTCAGCTGATGAGGACCGGGACAGCCCCCAGGGGCAGACCACAGACCCCAGTGAGCGGAAGAAG
CCGGCGCCAGGACCCCACAGTAGCCCCCCAGAGGAGAAGGGGGCCTTCGGGGATGCCCCGGCCACTGAGC
AGCCACCCCTGCCGCCCCCAGCCCCGCACAAGCCCCTGGACGATGTCTACAGCCTATTTTTTGCCAACAA
CAACTGGTACTTCTTCCTGCGCCTGCACCAGACCCTGTGCTCCAGGCTGCTGAAGATCTACCGCCAGGCG
CAGAAGCAGCTTCTGGAGTATCGGACCGAGAAGGAGCGGGAGAAGCTGCTGTGTGAGGGCCGCAGGGAGA
AGGGCAGCGACCCCGCCATGGAGCTGCGGCTGAAGCAGCCCAGTGAAGTGGAGCTGGAGGAGTACTACCC
GGCCTTCCTGGACATGGTGCGGAGCCTGCTGGAGGGCAGCATCGACCCCACGCAGTACGAGGACACCCTA
CGCGAGATGTTCACCATCCATGCCTACGTGGGCTTCACCATGGACAAGCTGGTGCAGAACATTGCGCGGC
AGCTGCACCACCTCGTGAGCGATGACGTCTGCCTGAAGGTGGTGGAGCTCTACCTGAACGAGAAGAAGCG
GGGTGCCGCTGGTGGGAACCTGTCCTCCCGCTGCGTCCGCGCTGCTAGGGAGACCAGCTACCAGTGGAAG
GCTGAGCGCTGCATGGCCGACGAGAACTGCTTCAAGGTGATGTTCCTGCAGCGCAAAGGGCAGGTGATCA
TGACCATCGAGCTCCTGGACACCGAGGAGGCCCAGACGGAGGACCCTGTGGAGGTCCAGCACCTGGCTCG
GTACGTGGAGCAGTATGTGGGGACCGAGGGCGCGTCCAGCTCGCCCACTGAGGGCTTCCTCCTGAAACCT
GTGTTCCTGCAGAGGAACCTCAAGAAGTTCCGCCGCCGGTGGCAGAGCGAGCAGGCGCGGGCCCTGCGCG
GTGAGGCCAGGAGCTCCTGGAAGCGGCTGGTGGGCGTGGAGAGCGCCTGCGACGTGGACTGCCGCTTCAA
GCTCAGCACTCACAAGATGGTGTTCATCGTGAACTCCGAGGACTACATGTACCGTCGCGGGACCCTCTGC
CGGGCCAAGCAGGTGCAGCCCCTGGTCCTGCTCCGCCACCACCAGCACTTTGAGGAGTGGCACAGCCGCT
GGCTGGAGGACAATGTGACGGTGGAGGCGGCTAGCCTGGTGCAGGACTGGCTGATGGGTGAGGAGGACGA
GGACATGGTACCCTGCAAGACGCTGTGTGAGACAGTGCACGTGCACGGCCTGCCCGTGACCCGCTACCGC
GTGCAGTACAGCCGCCGCCCGGCCTCGCCCTGA

Translation (1130 aa):
MAHAGGGSGGSGAGGPAGRGLSGARWGRSGSAGHEKLPVHVEDALTYLDQVKIRFGSDPATYNGFLEIMK
EFKSQSIDTPGVIRRVSQLFHEHPDLIVGFNAFLPLGYRIDIPKNGKLNIQSPLTSQENSHNHGDGAEDF
KQQVPYKEDKPQVPLESDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLNTRGRPFRGMSE
EEVFTEVANLFRGQEDLLSEFGQFLPEAKRSLFTGNGPCEMHSVQKNEHDKTPEHSRKRSRPSLLRPVSA
PAKKKMKLRGTKDLSIAAVGKYGTLQEFSFFDKVRRVLKSQEVYENFLRCIALFNQELVSGSELLQLVSP
FLGKFPELFAQFKSFLGVKELSFAPPMSDRSGDGISREIDYASCKRIGSSYRALPKTYQQPKCSGRTAIC
KEVLNDTWVSFPSWSEDSTFVSSKKTPYEEQLHRCEDERFELDVVLETNLATIRVLESVQKKLSRMAPED
QEKFRLDDSLGGTSEVIQRRAIYRIYGDKAPEIIESLKKNPVTAVPVVLKRLKAKEEEWREAQQGFNKIW
REQYEKAYLKSLDHQAVNFKQNDTKALRSKSLLNEIESVYDEHQEQHSEGRSAPSSEPHLIFVYEDRQIL
EDAAALISYYVKRQPAIQKEDQGTIHQLLHQFVPSLFFSQQLDLGASEESADEDRDSPQGQTTDPSERKK
PAPGPHSSPPEEKGAFGDAPATEQPPLPPPAPHKPLDDVYSLFFANNNWYFFLRLHQTLCSRLLKIYRQA
QKQLLEYRTEKEREKLLCEGRREKGSDPAMELRLKQPSEVELEEYYPAFLDMVRSLLEGSIDPTQYEDTL
REMFTIHAYVGFTMDKLVQNIARQLHHLVSDDVCLKVVELYLNEKKRGAAGGNLSSRCVRAARETSYQWK
AERCMADENCFKVMFLQRKGQVIMTIELLDTEEAQTEDPVEVQHLARYVEQYVGTEGASSSPTEGFLLKP
VFLQRNLKKFRRRWQSEQARALRGEARSSWKRLVGVESACDVDCRFKLSTHKMVFIVNSEDYMYRRGTLC
RAKQVQPLVLLRHHQHFEEWHSRWLEDNVTVEAASLVQDWLMGEEDEDMVPCKTLCETVHVHGLPVTRYR
VQYSRRPASP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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