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Report for CCDS74092.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
74092.1 Public Homo sapiens 17 COPZ2 24 110 108 CCDS HistoryNCBI Gene:51226Re-query CCDS DB by CCDS ID:74092.1Re-query CCDS DB by GeneID:51226See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 74092.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621465.5 ENSP00000480707.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621465.5Link to Ensembl Protein Viewer:ENSP00000480707.1Re-query CCDS DB by Nucleotide ID:ENST00000621465Re-query CCDS DB by Protein ID:ENSP00000480707
Original member Current member NCBI NM_016429.4 NP_057513.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016429.4Link to Protein Sequence:NP_057513.1Re-query CCDS DB by Nucleotide ID:NM_016429Re-query CCDS DB by Protein ID:NP_057513Link to BLAST:NP_057513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057513.1 210 Q9P299 210 100% 0 0

Chromosomal Locations for CCDS 74092.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 48026428 48026475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48028472 48028510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48029125 48029176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48032156 48032233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48032686 48032741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48033211 48033302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48033863 48033944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48036851 48036925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 48037667 48037777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (633 nt):
ATGCAGCGGCCCGAGGCCTGGCCACGTCCGCACCCGGGGGAGGGGGCCGCGGCGGCCCAGGCCGGGGGCC
CGGCGCCGCCTGCTCGAGCCGGGGAGCCCTCGGGGCTGCGGTTGCAGGAACCTTCCCTCTACACCATCAA
GGCTGTTTTCATCCTAGATAATGACGGGCGCCGGCTGCTGGCCAAGTATTATGATGACACATTCCCCTCC
ATGAAGGAGCAGATGGTTTTCGAGAAAAATGTCTTCAACAAGACCAGCCGGACTGAGAGTGAGATTGCAT
TTTTTGGGGGTATGACCATCGTCTACAAGAACAGCATTGACCTCTTCCTATACGTGGTGGGCTCATCCTA
CGAGAATGAGCTGATGCTCATGTCTGTTCTCACCTGCCTGTTTGAGTCTCTGAACCACATGTTAAGGAAG
AACGTGGAGAAGCGCTGGTTGCTGGAGAACATGGACGGAGCCTTCTTGGTGCTGGACGAGATTGTGGATG
GCGGTGTGATTCTGGAGAGTGACCCCCAGCAAGTGATCCAGAAGGTGAATTTTAGGGCAGATGATGGCGG
CTTGACTGAACAGAGTGTGGCCCAGGTTCTTCAGTCTGCCAAGGAACAAATTAAATGGTCGTTATTGAAA
TGA

Translation (210 aa):
MQRPEAWPRPHPGEGAAAAQAGGPAPPARAGEPSGLRLQEPSLYTIKAVFILDNDGRRLLAKYYDDTFPS
MKEQMVFEKNVFNKTSRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRK
NVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGGLTEQSVAQVLQSAKEQIKWSLLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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