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Report for CCDS73874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73874.1 Public Homo sapiens 16 ARMC5 24 110 108 CCDS HistoryNCBI Gene:79798Re-query CCDS DB by CCDS ID:73874.1Re-query CCDS DB by GeneID:79798See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000408912.7 ENSP00000386125.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000408912.7Link to Ensembl Protein Viewer:ENSP00000386125.3Re-query CCDS DB by Nucleotide ID:ENST00000408912Re-query CCDS DB by Protein ID:ENSP00000386125
Original member Current member NCBI NM_001288767.2 NP_001275696.1 Accepted alive Link to Nucleotide Sequence:NM_001288767.2Link to Protein Sequence:NP_001275696.1Re-query CCDS DB by Nucleotide ID:NM_001288767Re-query CCDS DB by Protein ID:NP_001275696Link to BLAST:NP_001275696.1

Chromosomal Locations for CCDS 73874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31458397 31458501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31458854 31458976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31459468 31459999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31461922 31462029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31462131 31462917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31464394 31464887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31465850 31465982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31466079 31466889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3093 nt):
ATGGTCACACTCGGGGCAGGAGTACGGCTTTTCACCGGTGTGTACCCAGTGGTGCTTAACCAGATCAGAG
CCACATCGGAAGCTTCTGCCATAACCCGGACAACGATGCCAGCTCCTGAGCTCACGAGCACGTCCAGAGC
GGAGGACACTCGGGACACCGGGGTCCAGCTCCGGAAACGGAAAATTCCACAAGCCCGTCACTCTAGGAAG
CGGCAGCGAACGTTCTCGTTCCGCTCCCTGGGATCAGCGGCGAGAAGCGGGGCGGAGTCTGAGGCCCGAG
CCAAGATGGCGGCTGCGAAGCCAACCCTCACGGACTCGCTCTCGTTCTGCCTCGCGCAGCTCGCGGCGGC
GGCCGGGGAGGCTCTGGGTGGGGAAAAGGACCCAGCGACCAACGAGACACCCCTGAGCCGCGCGCTCCTA
GCCCTCCGCACGCGCCACATCAAGGCAGCGGGGGGAATCGAGCGCTTCCGGGCACGCGGCGGGCTCCGCC
CCCTACTCGCGCTGCTACGGCGAGCGGCTGCAGCGGGTTCCGCCCCGTCCCAGGCAGGCCCCGGCTCCGC
CCCCTCGTCGGCCGCGTCGGGAGCTTCTAGCCCCGCCCCCGCGTCGGGCCCCGCCCCCTCCGCTGTGTCG
TCGTCTAGTCCTACGCCGCCAGTGCGCCTGCGCAAGACGCTGGACTTGGCGCTCAGCATCCTAGCCGATT
GCTGTACGGAAGGGGCGTGCCGGACCGAAGTGCGCAGACTCGGAGGCATACTCCCTTTGGTGACCATTCT
TCAGTGCATGAAGACAGACAGCATCCAGAACCGAACGGCCCGTGCCCTGGGGAACTTAGCCATGGAACCT
GAGAGCTGTGGGGACATCCACTGTGCTGGTGCTGTTCCCCTGCTTGTGGAGAGCCTGACAGCCTGCCAGG
ACTCGCAGTGCCTACAGAGCGTGGTGCGTGCCCTCCGTAACCTGGCAGACTCACCCCAGCACCGCCTGGC
CTTGGCACAGCAGGGAGCAGTGCGTCCGCTGGCCGAGCTCCTGGCCACTGCCCCAGATGCTGCACTGACC
TTAGCCCTCGTCCGTGCCCTCCTGGAACTCAGCCGAGGCTGCTCCCGGGCCTGTGCTGAGCAGCTAAGTC
TGGGTGGGGGATTGGGCCCACTCGTCAGCCTGGCTTCCCACCCCAAGCGGGCAGTACGCGAGGGAACCAT
TCTGATCCTCGCCAACCTGTGTGCCCAGGGCCTGATTCGGCCTGCACTGGGCAATGCTGGTGGCGTGGAG
GTGCTGGTAGATGAGCTCCGGCAGCGCCGGGATCCTAATGGAGCTAGCCCAACCTCCCAGCAGCCCCTGG
TGCGGGCTGTGTGCCTCCTATGTCGTGAGGCCATCAACCGGGCCCGACTGCGGGATGCTGGTGGCTTGGA
TCTACTGATGGGCCTGCTGCGGGACCCTCGTGCAAGCGCATGGCACCCTCGTATTGTGGCTGCCCTTGTG
GGGTTTCTGTATGACACTGGGGCCCTGGGCCGGCTGCAGGCTCTGGGACTTGTGCCTCTCCTGGCTGGGC
AGCTGTGTGGTGAGGCTGGTGAGGAGGAAGAAGAGGGAAGAGAAGCTGCTTCCTGGGACTTTCCTGAGGA
GAGGACCCCTGAGCGGGCACAGGGTGGAAGCTTCCGGAGCCTCAGGTCGTGGCTGATCTCCGAGGGCTAT
GCCACAGGCCCTGATGACATCTCCCCCGACTGGTCTCCTGAGCAGTGTCCGCCGGAGCCCATGGAGCCGG
CCAGCCCCGCCCCGACCCCGACCTCGCTGCGGGCACCACGCACCCAACGCACTCCGGGCCGCAGCCCCGC
CGCCGCCATCGAGGAGCCTTGGGGACGCGAAGGGCCAGCCCTGCTGCTGCTGTCGCGCTTTTCCCAGGCC
CCTGACCCAAGTGGGGCACTTGTGACCGGCCCGGCGCTGTACGGCCTGCTGACCTATGTGACCGGCGCAC
CGGGCCCGCCCAGCCCACGTGCACTGCGCATTCTGTCACGCCTCACCTGCAACCCTGCCTGCCTCGAGGC
CTTCGTGCGCAGCTATGGCGCGGCGCTGCTGCGGGCCTGGCTGGTGCTGGGGGTGGCGCCTGACGATTGG
CCGGCACCACGTGCCCGGCCCACTCTCCACAGCCGGCACCGAGAGCTGGGGGAGAGGCTACTGCAGAACC
TGACGGTTCAGGCTGAGTCGCCCTTTGGGGTTGGGGCCCTGACGCACCTGCTGCTCTCTGGGAGCCCTGA
GGACCGAGTGGCCTGCGCGCTGACCCTGCCCTTCATCTGCCGGAAGCCCTCTCTGTGGCGCCGGCTGCTT
CTGGAGCAGGGTGGTCTCCGGCTCCTCCTTGCGGCGCTGACCCGGCCGGCCCCACACCCGCTCTTCCTCT
TCTTTGCCGCGGACTCCCTTTCCTGCCTCCAAGACCTGGTGTCTCCCACTGTGAGCCCAGCTGTCCCACA
GGCAGTCCCCATGGACCTAGACTCACCTTCCCCTTGCCTCTATGAACCTCTGCTGGGCCCAGCCCCTGTC
CCAGCTCCCGACCTGCACTTCCTGCTGGACTCAGGCCTCCAGCTCCCTGCCCAGCGAGCGGCCTCAGCCA
CCGCCTCCCCTTTCTTCCGGGCCCTGCTGTCAGGCAGCTTTGCAGAAGCCCAGATGGACCTGGTGCCCCT
GCGAGGTCTGTCGCCTGGTGCAGCCTGGCCTGTCCTGCATCATTTGCATGGTTGTCGGGGGTGTGGGGCT
GCCCTGGGGCCCGTGCCCCCACCAGGCCAGCCCCTGCTGGGTTCAGAGGCCGAGGAGGCACTGGAGGCTG
CTGGCCGTTTCCTACTGCCTGGGCTGGAGGAGGAGCTGGAAGAGGCCGTGGGCCGCATCCACCTGGGACC
CCAGGGTGGCCCGGAGTCAGTGGGTGAGGTGTTCCGCCTGGGCCGGCCCCGGCTGGCTGCCCACTGTGCC
CGCTGGACACTGGGGTCAGAGCAGTGCCCGAGGAAGCGGGGTCTGGCCCTGGTGGGGCTTGTGGAGGCAG
CAGGTGAAGAGGCAGGGCCCCTGACGGAGGCTTTGCTGGCTGTGGTGATGGGGATTGAGTTGGGGGCAAG
GGTCCCTGCCTAG

Translation (1030 aa):
MVTLGAGVRLFTGVYPVVLNQIRATSEASAITRTTMPAPELTSTSRAEDTRDTGVQLRKRKIPQARHSRK
RQRTFSFRSLGSAARSGAESEARAKMAAAKPTLTDSLSFCLAQLAAAAGEALGGEKDPATNETPLSRALL
ALRTRHIKAAGGIERFRARGGLRPLLALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVS
SSSPTPPVRLRKTLDLALSILADCCTEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARALGNLAMEP
ESCGDIHCAGAVPLLVESLTACQDSQCLQSVVRALRNLADSPQHRLALAQQGAVRPLAELLATAPDAALT
LALVRALLELSRGCSRACAEQLSLGGGLGPLVSLASHPKRAVREGTILILANLCAQGLIRPALGNAGGVE
VLVDELRQRRDPNGASPTSQQPLVRAVCLLCREAINRARLRDAGGLDLLMGLLRDPRASAWHPRIVAALV
GFLYDTGALGRLQALGLVPLLAGQLCGEAGEEEEEGREAASWDFPEERTPERAQGGSFRSLRSWLISEGY
ATGPDDISPDWSPEQCPPEPMEPASPAPTPTSLRAPRTQRTPGRSPAAAIEEPWGREGPALLLLSRFSQA
PDPSGALVTGPALYGLLTYVTGAPGPPSPRALRILSRLTCNPACLEAFVRSYGAALLRAWLVLGVAPDDW
PAPRARPTLHSRHRELGERLLQNLTVQAESPFGVGALTHLLLSGSPEDRVACALTLPFICRKPSLWRRLL
LEQGGLRLLLAALTRPAPHPLFLFFAADSLSCLQDLVSPTVSPAVPQAVPMDLDSPSPCLYEPLLGPAPV
PAPDLHFLLDSGLQLPAQRAASATASPFFRALLSGSFAEAQMDLVPLRGLSPGAAWPVLHHLHGCRGCGA
ALGPVPPPGQPLLGSEAEEALEAAGRFLLPGLEEELEEAVGRIHLGPQGGPESVGEVFRLGRPRLAAHCA
RWTLGSEQCPRKRGLALVGLVEAAGEEAGPLTEALLAVVMGIELGARVPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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