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Report for CCDS73589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73589.1 Public Homo sapiens 13 SLAIN1 24 110 108 CCDS HistoryNCBI Gene:122060Re-query CCDS DB by CCDS ID:73589.1Re-query CCDS DB by GeneID:122060See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73589.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351546.7 ENSP00000314546.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000351546.7Link to Ensembl Protein Viewer:ENSP00000314546.8Re-query CCDS DB by Nucleotide ID:ENST00000351546Re-query CCDS DB by Protein ID:ENSP00000314546
Original member Current member NCBI NM_001242871.2 NP_001229800.1 Accepted alive Link to Nucleotide Sequence:NM_001242871.2Link to Protein Sequence:NP_001229800.1Re-query CCDS DB by Nucleotide ID:NM_001242871Re-query CCDS DB by Protein ID:NP_001229800Link to BLAST:NP_001229800.1

Chromosomal Locations for CCDS 73589.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77744459 77744516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77746514 77746855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77753203 77753358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77760828 77761110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77763145 77763220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (915 nt):
ATGAGGCTTCCACTTGGAATATACAGGCAGAGGGGGAGGTTCAGGCATTTCTCTCCAGGTCTCAGGCAAG
ATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGTGTGTCATTGAGTTCAGGAAAAAAAGG
GACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGATGAAGAGGAATTTGATCATTTGCCACCA
CCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAATTCCCCATTCACAGACTTTCTCCAGCA
TTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCAAATAATTACCAGCAGCAACAGTATTA
TTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCAATGGAGATAAGCTCCGAAGAAGTATG
CCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAACATTAGTTCTCCGGTCACCGTGCGAA
ATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGAATTTCAAGAATACAATCTTGTATTCC
ATCACCGGGACAGCTTCAACACAGGGTCCACAGCGTGGGGCATTTCCCAGTGTCTATCCGACAGCCTCTT
AAAGCCACAGCCTATGTGAGTCCAACCGTTCAAGGCAGCAGTAACATGCCTTTATCAAACGGCTTACAGC
TGTATTCCAACACAGGAATCCCCACACCGAACAAAGCTGCAGCTTCTGGGATAATGGGTCGCAGTGCACT
CCCAAGACCTTCGTTGGCAATAAATGGGAGTAACCTGCCTCGAAGCAAAATTGCACAACCTGTTAGAAGT
TTTCTTCAGCCTCCAAAGCCTCTGTCTTCACTCAGCACTCTGAGGGATGGAAATTGGAGAGATGGTTGCT
ACTAA

Translation (304 aa):
MRLPLGIYRQRGRFRHFSPGLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPP
PQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSM
PNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPL
KATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRS
FLQPPKPLSSLSTLRDGNWRDGCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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