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Report for CCDS73416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73416.1 Public Homo sapiens 11 SNX19 24 110 108 CCDS HistoryNCBI Gene:399979Re-query CCDS DB by CCDS ID:73416.1Re-query CCDS DB by GeneID:399979See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000530356.5 ENSP00000432307.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000530356.5Link to Ensembl Protein Viewer:ENSP00000432307.1Re-query CCDS DB by Nucleotide ID:ENST00000530356Re-query CCDS DB by Protein ID:ENSP00000432307
Original member Current member EBI ENST00000528555.5 ENSP00000435122.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000528555.5Link to Ensembl Protein Viewer:ENSP00000435122.1Re-query CCDS DB by Nucleotide ID:ENST00000528555Re-query CCDS DB by Protein ID:ENSP00000435122
Original member Current member NCBI NM_001301089.2 NP_001288018.1 Accepted alive Link to Nucleotide Sequence:NM_001301089.2Link to Protein Sequence:NP_001288018.1Re-query CCDS DB by Nucleotide ID:NM_001301089Re-query CCDS DB by Protein ID:NP_001288018Link to BLAST:NP_001288018.1

Chromosomal Locations for CCDS 73416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 130878422 130878554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130879624 130879711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130880622 130880806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130903255 130903384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130905953 130906133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130906625 130906721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130907953 130908083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130910018 130910137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 130910270 130910323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGACAGTGACAGAGTAGAAGCCCGTAAGAGCCTCCTAGAATCATTCCTAAAGCAACTCTGTGCCATTC
CGGAGATCGCTAACAGTGAGGAGGTGCAGGAGTTCCTTGCTCTGAACACAGATGCTCGTATTGCCTTTGT
CAAGAAACCATTTATGGTCTCTAGAATAGACAAGATGGTGGTGAGTGCCATTGTGGACACCTTGAAGACA
GCGTTTCCTCGCTCTGAACCCCAGAGCCCCACAGAGGAGCTGAGTGAGGCCGAGACCGAAAGCAAGCCCC
AGACAGAAGGCAAGAAGGCTAGCAAGTCTAGGCTGAGGTTCTCATCCAGTAAAATTTCTCCAGCACTAAG
TGTGACTGAAGCACAAGACAAGATTCTTTATTGTCTCCAGGAAGGCAATGTGGAGTCTGAGACTCTATCC
ATGTCTGCGATGGAATCTTTTATTGAAAAACAGACAAAGTTACTGGAAATGCAGCCAACAAAAGCCCCAG
AAAAAGATCCTGAACAACCTCCCAAAGGACGTGTGGACAGTTGCGTGTCAGATGCAGCCGTGCCAGCCCA
AGACCCCAGCAACAGCGATCCAGGAACAGAGACAGAGTTAGCTGACACAGCCCTGGATCTGCTCCTCTTG
CTACTAACAGAACAGTGGAAATGGCTATGTACCGAAAACATGCAAAAGTTTCTTCGTCTTATCTTTGGGA
CCCTAGTTCAAAGGTGGCTAGAGGTGCAGGTAGCTAATTTAACAAGTCCACAGCGCTGGGTGCAGTACCT
CCTGCTTCTTCAGGAGTCCATCTGGCCTGGTGGAGTTTTGCCTAAGTTTCCACGGCCCGTAAGGACCCAA
GAGCAGAAACTGGCTGCTGAGAAACAGGCTTTGCAGAGCCTGATGGGAGTCCTCCCAGATCTCGTAGTAG
AAATTCTTGGGGTGAACAAATGCCGGCTGAGCTGGGGTCTAGTCCTGGAGTCACTACAACAACCCCTCAT
CAACAGGCATTTGATTTACTGCCTTGGGGACATCATCCTGGAATTCTTGGATCTCAGTGCCTCTGTTGAG
GAGTCTGCTGCTACCACCTCTGCCTCAGATACCCCAGGCAACTCTAAGAGGATGGGTGTCTCCTCTTAG

Translation (372 aa):
MDSDRVEARKSLLESFLKQLCAIPEIANSEEVQEFLALNTDARIAFVKKPFMVSRIDKMVVSAIVDTLKT
AFPRSEPQSPTEELSEAETESKPQTEGKKASKSRLRFSSSKISPALSVTEAQDKILYCLQEGNVESETLS
MSAMESFIEKQTKLLEMQPTKAPEKDPEQPPKGRVDSCVSDAAVPAQDPSNSDPGTETELADTALDLLLL
LLTEQWKWLCTENMQKFLRLIFGTLVQRWLEVQVANLTSPQRWVQYLLLLQESIWPGGVLPKFPRPVRTQ
EQKLAAEKQALQSLMGVLPDLVVEILGVNKCRLSWGLVLESLQQPLINRHLIYCLGDIILEFLDLSASVE
ESAATTSASDTPGNSKRMGVSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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