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Report for CCDS73023.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73023.1 Public Homo sapiens 1 TRAF3IP3 24 110 108 CCDS HistoryNCBI Gene:80342Re-query CCDS DB by CCDS ID:73023.1Re-query CCDS DB by GeneID:80342See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 73023.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367023.5 ENSP00000355990.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367023.5Link to Ensembl Protein Viewer:ENSP00000355990.1Re-query CCDS DB by Nucleotide ID:ENST00000367023Re-query CCDS DB by Protein ID:ENSP00000355990
Original member Current member NCBI NM_001287754.2 NP_001274683.1 Accepted alive Link to Nucleotide Sequence:NM_001287754.2Link to Protein Sequence:NP_001274683.1Re-query CCDS DB by Nucleotide ID:NM_001287754Re-query CCDS DB by Protein ID:NP_001274683Link to BLAST:NP_001274683.1

Chromosomal Locations for CCDS 73023.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 209775367 209775489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209775599 209775736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209777352 209777487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209778111 209778173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 209779315 209779403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (549 nt):
ATGAAAAAAGTACTACTGGAGATGGAAGACCAGAAAAACAGCTATGAGCAGAAGGCCAAGGAGTCACTGC
AGAAAGTGCTGGAGGAGAAAATGAATGCAGAGCAGCAACTACAGAGCACACAGCGATCCCTGGCCCTGGC
AGAGCAGAAGTGTGAAGAGTGGAGGAGCCAGTATGAGGCTCTGAAGGAGGACTGGAGGACCCTTGGGACC
CAGCACAGGGAGCTGGAGAGCCAACTCCACGTGCTTCAGTCCAAACTGCAGGGAGCAGATAGCAGGGACT
TACAGATGAACCAGGCCCTGCGATTTTTGGAAAATGAGCACCAGCAACTGCAGGCCAAGATTGAATGCCT
GCAAGGGGACAGAGACCTGTGCAGCTTGGATACCCAGGACCTACAAGATCAACTAAAAAGGTCAGAGGCA
GAGAAACTCACCCTGGTGACCAGAGTACAGCAGTTGCAGGGTTTGCTTCAAAATCAATCCTTACAGCTTC
AAGAACAGGAGAAACTCTTAACAAAGAAAGGTCAGCAAATTTATTACCACAAATTCTAA

Translation (182 aa):
MKKVLLEMEDQKNSYEQKAKESLQKVLEEKMNAEQQLQSTQRSLALAEQKCEEWRSQYEALKEDWRTLGT
QHRELESQLHVLQSKLQGADSRDLQMNQALRFLENEHQQLQAKIECLQGDRDLCSLDTQDLQDQLKRSEA
EKLTLVTRVQQLQGLLQNQSLQLQEQEKLLTKKGQQIYYHKF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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