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Report for CCDS72946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72946.1 Public Homo sapiens 1 PAQR6 24 110 108 CCDS HistoryNCBI Gene:79957Re-query CCDS DB by CCDS ID:72946.1Re-query CCDS DB by GeneID:79957See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000612424.4 ENSP00000482685.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000612424.4Link to Ensembl Protein Viewer:ENSP00000482685.1Re-query CCDS DB by Nucleotide ID:ENST00000612424Re-query CCDS DB by Protein ID:ENSP00000482685
Original member Current member NCBI NM_001272106.2 NP_001259035.1 Accepted alive Link to Nucleotide Sequence:NM_001272106.2Link to Protein Sequence:NP_001259035.1Re-query CCDS DB by Nucleotide ID:NM_001272106Re-query CCDS DB by Protein ID:NP_001259035Link to BLAST:NP_001259035.1

Chromosomal Locations for CCDS 72946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156243861 156244403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156244690 156244789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156245142 156245238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156245535 156245646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGCCGCCTACTCCATGCCGGCCTCCTGGCTGCACGGCCACCTGCACCAGTTCTTTGTGCCTGCCGCCGC
ACTCAACTCCTTCCTGTGCACCGGCCTCTCCTGCTACTCCCGTTTCCTGGAGCTGGAAAGCCCTGGGCTC
AGTAAGGTCCTCCGCACAGGAGCCTTCGCCTATCCATTCCTGTTCGACAACCTCCCACTCTTTTATCGGG
CTGGCACCAGGACGCTTTGATTACATCGGTGAGGGCACGCCTGGCCCGGCCCGGGAAGAGGCAGGGGCAG
ATGCCTTCCCAGAGCACAGAATGAACTGGGCCACAGCCACCAGTTATTCCACATCTGTGCAGTGCTGGGC
ACCCACTTCCAGCTGGAGGCAGTGCTGGCTGATATGGGATCACGCAGAGCCTGGCTGGCCACACAGGAAC
CTGCCCTGGGCCTGGCAGGCACAGTGGCCACACTGGTCTTGGCTGCAGCTGGGAACCTACTCATTATTGC
TGCTTTCACAGCCACCCTGCTTCGGGCCCCCAGTACATGCCCTCTGCTGCAGGGTGGCCCACTGGAGGGG
GGTACCCAGGCCAAACAACAGTGAGGCCCCATCCCTGACCCTGTCCTGGAGGGGGCAGAGGCCAGGCCCC
AGTGCTGACGAGGAGCCCAGATTTGGGCCTAATCAGGTGGGGACGCATCTCAGCCTGGAACCAACAGGGG
CTGAGGAGAGAGGGCACAGGAGAGAGGGCAGAGAAGAGGAGGGGTGTCTAGGGGGACTGGCAGAGTGTGA
GAGGGACCGTGAGGGGGCTCTTGATGGGAGTGGAAGAAGTGCTGAGGGTCTGAGAGGGGAGATGCATGCG
TGTCCAGGCTGA

Translation (283 aa):
MPPTPCRPPGCTATCTSSLCLPPHSTPSCAPASPATPVSWSWKALGSVRSSAQEPSPIHSCSTTSHSFIG
LAPGRFDYIGEGTPGPAREEAGADAFPEHRMNWATATSYSTSVQCWAPTSSWRQCWLIWDHAEPGWPHRN
LPWAWQAQWPHWSWLQLGTYSLLLLSQPPCFGPPVHALCCRVAHWRGVPRPNNSEAPSLTLSWRGQRPGP
SADEEPRFGPNQVGTHLSLEPTGAEERGHRREGREEEGCLGGLAECERDREGALDGSGRSAEGLRGEMHA
CPG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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