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Report for CCDS7279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7279.1 Public Homo sapiens 10 HNRNPH3 24 110 108 CCDS HistoryNCBI Gene:3189Re-query CCDS DB by CCDS ID:7279.1Re-query CCDS DB by GeneID:3189See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354695.5 ENSP00000346726.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000354695.5Link to Ensembl Protein Viewer:ENSP00000346726.5Re-query CCDS DB by Nucleotide ID:ENST00000354695Re-query CCDS DB by Protein ID:ENSP00000346726
Original member Current member NCBI NM_001322438.1 NP_001309367.1 Accepted alive Link to Nucleotide Sequence:NM_001322438.1Link to Protein Sequence:NP_001309367.1Re-query CCDS DB by Nucleotide ID:NM_001322438Re-query CCDS DB by Protein ID:NP_001309367Link to BLAST:NP_001309367.1
Original member Current member NCBI NM_001322439.2 NP_001309368.1 Accepted alive Link to Nucleotide Sequence:NM_001322439.2Link to Protein Sequence:NP_001309368.1Re-query CCDS DB by Nucleotide ID:NM_001322439Re-query CCDS DB by Protein ID:NP_001309368Link to BLAST:NP_001309368.1
Original member Current member NCBI NM_001322440.2 NP_001309369.1 Accepted alive Link to Nucleotide Sequence:NM_001322440.2Link to Protein Sequence:NP_001309369.1Re-query CCDS DB by Nucleotide ID:NM_001322440Re-query CCDS DB by Protein ID:NP_001309369Link to BLAST:NP_001309369.1
Original member Current member NCBI NM_001322441.2 NP_001309370.1 Accepted alive Link to Nucleotide Sequence:NM_001322441.2Link to Protein Sequence:NP_001309370.1Re-query CCDS DB by Nucleotide ID:NM_001322441Re-query CCDS DB by Protein ID:NP_001309370Link to BLAST:NP_001309370.1
Original member Current member NCBI NM_021644.4 NP_067676.2 Accepted alive Link to Nucleotide Sequence:NM_021644.4Link to Protein Sequence:NP_067676.2Re-query CCDS DB by Nucleotide ID:NM_021644Re-query CCDS DB by Protein ID:NP_067676Link to BLAST:NP_067676.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001309367.1 331 P31942-2 331 100% 0 0
NP_001309368.1 331 P31942-2 331 100% 0 0
NP_001309369.1 331 P31942-2 331 100% 0 0
NP_001309370.1 331 P31942-2 331 100% 0 0
NP_067676.2 331 P31942-2 331 100% 0 0

Chromosomal Locations for CCDS 7279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68337222 68337333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68337858 68337996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68338503 68338642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68339140 68339226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68339440 68339555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341174 68341309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341585 68341680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341759 68341851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68341978 68342054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGGATTGGGTTATGAAACATAATGGTCCAAATGACGCTAGTGATGGGACAGTACGACTTCGTGGACTAC
CATTTGGTTGCAGCAAAGAGGAAATAGTTCAGTTCTTTCAAGGGTTGGAAATCGTGCCAAATGGGATAAC
ATTGACGATGGACTACCAGGGGAGAAGCACAGGGGAGGCCTTCGTGCAGTTTGCTTCAAAGGAGATAGCA
GAAAATGCTCTGGGGAAACACAAGGAAAGAATAGGGCACAGGTATATTGAGATCTTCAGAAGTAGCAGGA
GTGAAATCAAAGGATTTTATGATCCACCAAGAAGATTGCTGGGACAGCGACCGGGACCATATGATAGACC
AATAGGAGGAAGAGGGGGTTATTATGGAGCTGGGCGTGGAAGTTATGGAGGTTTTGATGACTATGGTGGC
TATAATAATTACGGCTATGGGAATGATGGCTTTGATGACAGAATGAGAGATGGAAGAGGTATGGGAGGAC
ATGGCTATGGTGGAGCTGGTGATGCAAGTTCAGGTTTTCATGGTGGTCATTTCGTACATATGAGAGGGTT
GCCTTTTCGTGCAACTGAAAATGACATTGCTAATTTCTTCTCACCACTAAATCCAATACGAGTTCATATT
GATATTGGAGCTGATGGCAGAGCCACAGGAGAAGCAGATGTAGAGTTTGTGACACATGAAGATGCAGTAG
CTGCCATGTCTAAAGATAAAAATAACATGCAACATCGATATATTGAACTCTTCTTGAATTCTACTCCTGG
AGGCGGCTCTGGCATGGGAGGTTCTGGAATGGGAGGCTACGGAAGAGATGGAATGGATAATCAGGGAGGC
TATGGATCAGTTGGAAGAATGGGAATGGGGAACAATTACAGTGGAGGATATGGTACTCCTGATGGTTTGG
GTGGTTATGGCCGTGGTGGTGGAGGCAGTGGAGGTTACTATGGGCAAGGCGGCATGAGTGGAGGTGGATG
GCGTGGGATGTACTGA

Translation (331 aa):
MDWVMKHNGPNDASDGTVRLRGLPFGCSKEEIVQFFQGLEIVPNGITLTMDYQGRSTGEAFVQFASKEIA
ENALGKHKERIGHRYIEIFRSSRSEIKGFYDPPRRLLGQRPGPYDRPIGGRGGYYGAGRGSYGGFDDYGG
YNNYGYGNDGFDDRMRDGRGMGGHGYGGAGDASSGFHGGHFVHMRGLPFRATENDIANFFSPLNPIRVHI
DIGADGRATGEADVEFVTHEDAVAAMSKDKNNMQHRYIELFLNSTPGGGSGMGGSGMGGYGRDGMDNQGG
YGSVGRMGMGNNYSGGYGTPDGLGGYGRGGGGSGGYYGQGGMSGGGWRGMY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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