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Report for CCDS72773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72773.1 Public Homo sapiens 1 TMEM53 24 110 108 CCDS HistoryNCBI Gene:79639Re-query CCDS DB by CCDS ID:72773.1Re-query CCDS DB by GeneID:79639See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72773.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372235.7 ENSP00000361309.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372235.7Link to Ensembl Protein Viewer:ENSP00000361309.3Re-query CCDS DB by Nucleotide ID:ENST00000372235Re-query CCDS DB by Protein ID:ENSP00000361309
Original member Current member NCBI NM_001300747.2 NP_001287676.1 Accepted alive Link to Nucleotide Sequence:NM_001300747.2Link to Protein Sequence:NP_001287676.1Re-query CCDS DB by Nucleotide ID:NM_001300747Re-query CCDS DB by Protein ID:NP_001287676Link to BLAST:NP_001287676.1

Chromosomal Locations for CCDS 72773.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 44654559 44655119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44660174 44660295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 44674331 44674391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGCCTCGGCAGAGCTGGACTACACCATCGAGATCCCGGATCAGCCCTGCTGGAGCCAGAAGAACAGCC
CCAGCCCAGGTGGGAAGGAGGCAGAAACTCGGCAGCCTGTGGTGATTCTCTTGGGCTGGGGTGGCTGCAA
GGACAAGAACCTTGCCAAGTACAGTGCCATCTACCACAAAAGGAAGCTGCTCGAGCTGCTCTTTGATTAT
GAGATTGAGAAGGAGCCCCTGCTCTTCCATGTCTTCAGCAACGGTGGCGTCATGCTGTACCGCTACGTGC
TGGAGCTCCTGCAGACCCGTCGCTTCTGCCGCCTGCGTGTGGTGGGCACCATCTTTGACAGCGCTCCTGG
TGACAGCAACCTGGTAGGGGCTCTGCGGGCCCTGGCAGCCATCCTGGAGCGCCGGGCCGCCATGCTGCGC
CTGTTGCTGCTGGTGGCCTTTGCCCTGGTGGTCGTCCTGTTCCACGTCCTGCTTGCTCCCATCACAGCCC
TCTTCCACACCCACTTCTATGACAGGCTACAGGACGCGGGCTCTCGCTGGCCCGAGCTCTACCTCTACTC
GAGGGCTGACGAAGTAGTCCTGGCCAGAGACATAGAACGCATGGTGGAGGCACGCCTGGCACGCCGGGTC
CTGGCGCGTTCTGTGGATTTCGTGTCATCTGCACACGTCAGCCACCTCCGTGACTACCCTACTTACTACA
CAAGCCTCTGTGTCGACTTCATGCGCAACTGCGTCCGCTGCTGA

Translation (247 aa):
MASAELDYTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHKRKLLELLFDY
EIEKEPLLFHVFSNGGVMLYRYVLELLQTRRFCRLRVVGTIFDSAPGDSNLVGALRALAAILERRAAMLR
LLLLVAFALVVVLFHVLLAPITALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDIERMVEARLARRV
LARSVDFVSSAHVSHLRDYPTYYTSLCVDFMRNCVRC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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