NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS72771.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72771.1 Public Homo sapiens 1 HYI 24 110 108 CCDS HistoryNCBI Gene:81888Re-query CCDS DB by CCDS ID:72771.1Re-query CCDS DB by GeneID:81888See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72771.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000583037.5 ENSP00000461969.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000583037.5Link to Ensembl Protein Viewer:ENSP00000461969.2Re-query CCDS DB by Nucleotide ID:ENST00000583037Re-query CCDS DB by Protein ID:ENSP00000461969
Original member Current member NCBI NM_001243526.2 NP_001230455.1 Accepted alive Link to Nucleotide Sequence:NM_001243526.2Link to Protein Sequence:NP_001230455.1Re-query CCDS DB by Nucleotide ID:NM_001243526Re-query CCDS DB by Protein ID:NP_001230455Link to BLAST:NP_001230455.1

Chromosomal Locations for CCDS 72771.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 43451310 43451311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43451428 43451544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43451648 43451717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43451798 43451847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43451935 43452013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43452205 43452319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43452903 43453004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43453413 43453497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 43453595 43453793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (819 nt):
ATGGCGCCGCTGCGCTTCTCCGCCAATCTGTCCTGGCTATTCCCCGAGCTCTCCGGCCTCCCCGCGCGGG
TGCGGGCCGCGGGCAGCTCGGGCTTCGAGGCCGTCGAGGTGGCCTGGCCGTACGCGGAGACGCCTGAGGC
GCTGGCGCGCGCCGCGCGAGAAGCGGGGCTGCGGCTTGTACTGATCAACACGCCCCCGGGAGACCAAGAG
AAGGGGGAAATGGGGCTGGGGGCCGTCCCCGGGAGACAGGCGGCCTTCCGAGAGGGACTGGAGCAGGCCG
TGCGGAGTGGGCATTGCTTGATGGGCAGGAAGTTGAGTGTTCCTTGCAAGGGTGCTGTGGCAAGAGGAGG
CCTGGTGTATTTGGCAGCGTTCCTGAGGCTGGACATGATCCACCTGATGGCTGGCCGAGTACCCCAGGGA
GCTGATCGAATAGCAGTCAAGGCTGAGATGGAGGCCGTTTTTCTGGAGAACCTGAGGCATGCAGCTGGGG
TTTTGGCTCAGGAGGACCTCGTGGGACTGCTGGAGCCCATCAACACCCGCATCACTGACCCCCAGTACTT
CCTGGACACGCCCCAGCAGGCGGCAGCCATCTTACAGAAGGTAGGAAGACCCAACCTCCAATTACAAATG
GACATATTCCACTGGCAGATCATGGATGGGAACCTGACAGGAAACATCCGGGAGTTCCTGCCCATTGTTG
GGCATGTGCAGGTGGCACAGGTCCCAGGCCGAGGGGAGCCCAGCAGCCCCGGAGAGCTGAATTTCCCCTA
TCTGTTTCAACTGCTGGAAGATGAAGGCTACAAAGGCTTCGTGGGCTGA

Translation (272 aa):
MAPLRFSANLSWLFPELSGLPARVRAAGSSGFEAVEVAWPYAETPEALARAAREAGLRLVLINTPPGDQE
KGEMGLGAVPGRQAAFREGLEQAVRSGHCLMGRKLSVPCKGAVARGGLVYLAAFLRLDMIHLMAGRVPQG
ADRIAVKAEMEAVFLENLRHAAGVLAQEDLVGLLEPINTRITDPQYFLDTPQQAAAILQKVGRPNLQLQM
DIFHWQIMDGNLTGNIREFLPIVGHVQVAQVPGRGEPSSPGELNFPYLFQLLEDEGYKGFVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH