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Report for CCDS72710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72710.1 Public Homo sapiens 1 DNAJC16 24 110 108 CCDS HistoryNCBI Gene:23341Re-query CCDS DB by CCDS ID:72710.1Re-query CCDS DB by GeneID:23341See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 72710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000616884.4 ENSP00000480224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000616884.4Link to Ensembl Protein Viewer:ENSP00000480224.1Re-query CCDS DB by Nucleotide ID:ENST00000616884Re-query CCDS DB by Protein ID:ENSP00000480224
Original member Current member NCBI NM_001287811.2 NP_001274740.1 Accepted alive Link to Nucleotide Sequence:NM_001287811.2Link to Protein Sequence:NP_001274740.1Re-query CCDS DB by Nucleotide ID:NM_001287811Re-query CCDS DB by Protein ID:NP_001274740Link to BLAST:NP_001274740.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001274740.1 470 Q9Y2G8-2 470 100% 0 0

Chromosomal Locations for CCDS 72710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 15548342 15548428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15559526 15559656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15562142 15562325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15563929 15564111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15564283 15564359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15565919 15565999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15566082 15566180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15567099 15567269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 15567778 15568177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1413 nt):
ATGACAAGGCGGTACAACATCAATATCTACGCCCCTACCCTCTTGGTCTTTAAAGAACATATAAACAGGC
CTGCCGATGTTATCCAGGCCCGAGGTATGAAGAAGCAAATCATTGACGACTTCATCACCCGAAACAAATA
TCTATTGGCAGCCAGGCTCACCAGCCAGAAGTTGTTCCATGAACTCTGCCCTGTGAAACGGTCGCATCGA
CAGAGGAAGTACTGTGTGGTTTTATTGACTGCTGAGACTACCAAGTTGAGCAAACCCTTTGAGGCTTTCC
TGTCCTTTGCCCTGGCAAACACTCAAGACACAGTGAGATTTGTGCATGTCTACAGCAATCGGCAGCAGGA
GTTTGCCGACACCTTACTACCAGACAGTGAGGCGTTTCAAGGGAAATCAGCGGTGTCTATTTTAGAAAGG
CGCAACACAGCAGGAAGGGTGGTGTATAAAACCCTGGAAGACCCTTGGATTGGGAGTGAGAGTGACAAAT
TTATCCTCTTGGGCTATCTCGACCAGCTGCGTAAAGATCCAGCTCTTCTGTCCTCTGAAGCAGTGCTTCC
TGACCTGACCGATGAACTTGCCCCTGTTTTTCTCCTTCGATGGTTCTACTCTGCTTCTGACTACATCTCA
GACTGCTGGGATAGCATTTTTCACAACAACTGGAGGGAAATGATGCCCCTGCTGTCCCTGATCTTCTCTG
CCCTCTTCATCCTCTTCGGCACTGTCATCGTTCAGGCTTTCAGCGACTCTAATGATGAGCGAGAGTCAAG
CCCTCCAGAAAAAGAGGAAGCCCAAGAGAAGACTGGGAAAACTGAGCCAAGCTTCACCAAAGAAAACAGC
AGCAAGATTCCTAAAAAAGGCTTTGTGGAGGTAACTGAACTCACAGATGTAACATACACCAGTAACTTGG
TACGTCTGAGGCCAGGCCACATGAATGTGGTCCTCATCCTGTCGAATTCTACCAAGACCAGCCTACTACA
GAAATTTGCTTTGGAGGTCTACACATTTACTGGGAGCAGCTGCCTACACTTCTCCTTCCTGAGTCTAGAT
AAACACAGAGAATGGCTAGAATACTTACTAGAATTTGCTCAAGATGCAGCTCCAATCCCAAACCAATATG
ATAAGCATTTCATGGAGCGTGACTACACTGGTTATGTACTGGCTCTGAATGGCCACAAGAAATACTTCTG
CCTCTTCAAGCCCCAAAAGACAGTCGAAGAGGAGGAAGCCATAGGGTCGTGCAGTGATGTTGACTCTTCC
CTCTACCTGGGTGAATCTCGAGGGAAACCTTCCTGTGGCCTTGGATCCAGGCCCATCAAAGGAAAGTTGA
GCAAGCTCTCTTTATGGATGGAACGCCTGCTGGAGGGCTCCTTACAGAGGTTTTATATCCCATCATGGCC
TGAACTAGACTGA

Translation (470 aa):
MTRRYNINIYAPTLLVFKEHINRPADVIQARGMKKQIIDDFITRNKYLLAARLTSQKLFHELCPVKRSHR
QRKYCVVLLTAETTKLSKPFEAFLSFALANTQDTVRFVHVYSNRQQEFADTLLPDSEAFQGKSAVSILER
RNTAGRVVYKTLEDPWIGSESDKFILLGYLDQLRKDPALLSSEAVLPDLTDELAPVFLLRWFYSASDYIS
DCWDSIFHNNWREMMPLLSLIFSALFILFGTVIVQAFSDSNDERESSPPEKEEAQEKTGKTEPSFTKENS
SKIPKKGFVEVTELTDVTYTSNLVRLRPGHMNVVLILSNSTKTSLLQKFALEVYTFTGSSCLHFSFLSLD
KHREWLEYLLEFAQDAAPIPNQYDKHFMERDYTGYVLALNGHKKYFCLFKPQKTVEEEEAIGSCSDVDSS
LYLGESRGKPSCGLGSRPIKGKLSKLSLWMERLLEGSLQRFYIPSWPELD


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
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