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Report for CCDS7263.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7263.1 Public Homo sapiens 10 RTKN2 24 110 108 CCDS HistoryNCBI Gene:219790Re-query CCDS DB by CCDS ID:7263.1Re-query CCDS DB by GeneID:219790See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7263.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373789.8 ENSP00000362894.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373789.8Link to Ensembl Protein Viewer:ENSP00000362894.3Re-query CCDS DB by Nucleotide ID:ENST00000373789Re-query CCDS DB by Protein ID:ENSP00000362894
Original member Current member NCBI NM_145307.4 NP_660350.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_145307.4Link to Protein Sequence:NP_660350.2Re-query CCDS DB by Nucleotide ID:NM_145307Re-query CCDS DB by Protein ID:NP_660350Link to BLAST:NP_660350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660350.2 609 Q8IZC4-1 609 100% 0 0

Chromosomal Locations for CCDS 7263.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62197908 62198443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62199754 62199861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62204857 62205022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62217118 62217249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62218195 62218301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62223238 62223332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62236066 62236263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62239648 62239765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62241142 62241195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62245999 62246057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62262625 62262821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62268551 62268610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1830 nt):
ATGGAGGGGCCGAGCCTGAGGGGTCCTGCGCTCCGCCTGGCGGGGCTTCCCACCCAGCAGGACTGCAACA
TTCAAGAAAAAATAGACTTAGAAATTCGAATGCGAGAAGGAATATGGAAACTCCTTTCTCTGAGCACTCA
GAAAGATCAAGTTTTACATGCAGTTAAGAATCTCATGGTGTGCAATGCTCGACTAATGGCCTATACATCG
GAGCTACAGAAATTAGAAGAACAGATTGCAAATCAGACTGGAAGATGTGATGTGAAATTTGAAAGTAAAG
AACGAACAGCATGTAAAGGAAAGATTGCCATATCAGATATTCGAATACCACTAATGTGGAAAGACTCTGA
TCACTTCAGCAATAAAGAACGATCACGACGCTATGCCATTTTTTGTTTATTCAAAATGGGAGCTAATGTG
TTTGATACTGATGTGGTGAATGTGGATAAAACAATCACAGATATATGTTTTGAAAATGTAACCATATTTA
ATGAAGCAGGGCCAGACTTTCAGATAAAGGTGGAAGTGTATAGTTGCTGTACAGAAGAATCTTCTATAAC
CAACACACCAAAAAAGCTAGCTAAGAAACTCAAGACATCTATAAGTAAAGCTACAGGAAAGAAAATAAGT
TCAGTGCTTCAAGAAGAGGATGATGAAATGTGCTTGCTCCTCAGCTCTGCTGTTTTTGGTGTAAAGTATA
ATTTGCTAGCTCACACTACCCTAACCTTGGAAAGTGCTGAGGATAGTTTCAAGACCCATAATCTGTCTAT
TAATGGAAATGAGGAGTCTTCATTTTGGCTTCCCCTGTATGGCAACATGTGCTGCCGACTAGTTGCCCAG
CCAGCTTGTATGGCTGAGGATGCATTTGCAGGATTTCTTAATCAGCAGCAAATGGTAGAAGGTCTGATTA
GTTGGAGAAGGTTGTATTGTGTTTTGCGAGGAGGTAAACTCTATTGTTTTTACAGTCCAGAGGAAATTGA
AGCTAAAGTGGAACCAGCTTTGGTAGTACCCATTAACAAGGAAACCAGAATCCGGGCAATGGATAAGGAT
GCCAAGAAAAGAATCCATAATTTCTCTGTCATCAATCCTGTTCCTGGACAAGCTATAACTCAGATTTTTG
CAGTTGACAATAGAGAAGATCTTCAGAAGTGGATGGAAGCCTTCTGGCAGCATTTCTTTGATCTTAGCCA
ATGGAAGCACTGTTGTGAAGAACTTATGAAAATTGAGATTATGTCACCACGGAAACCACCTTTGTTCTTG
ACAAAAGAGGCAACCTCAGTCTACCATGATATGAGCATTGATTCACCTATGAAACTTGAAAGTTTAACGG
ATATAATACAAAAAAAAATTGAAGAGACAAATGGGCAGTTCCTTATTGGTCAGCATGAAGAATCCTTACC
ACCTCCTTGGGCCACACTCTTTGATGGTAACCATCAAATGGTCATCCAGAAAAAGGTACTGTATCCTGCA
AGTGAGCCATTACATGATGAAAAAGGGAAAAAGAGACAAGCTCCCCTTCCTCCTTCTGATAAACTTCCAT
TCAGCTTAAAATCACAGAGTAACACAGATCAATTGGTTAAGGACAACTGGGGAAAAACAAGTGTATCTCA
GACATCGTCTTTGGATACCAAACTATCAACTCTAATGCATCACTTACAGAAACCAATGGCTGCTCCTCGA
AAACTTCTGCCTGCCAGGAGAAATAGATTAAGTGATGGTGAGCACACAGACACTAAAACCAATTTTGAAG
CCAAGCCAGTGCCAGCTCCAAGGCAGAAATCCATCAAAGACATTCTGGACCCTAGATCATGGCTGCAGGC
ACAAGTATAG

Translation (609 aa):
MEGPSLRGPALRLAGLPTQQDCNIQEKIDLEIRMREGIWKLLSLSTQKDQVLHAVKNLMVCNARLMAYTS
ELQKLEEQIANQTGRCDVKFESKERTACKGKIAISDIRIPLMWKDSDHFSNKERSRRYAIFCLFKMGANV
FDTDVVNVDKTITDICFENVTIFNEAGPDFQIKVEVYSCCTEESSITNTPKKLAKKLKTSISKATGKKIS
SVLQEEDDEMCLLLSSAVFGVKYNLLAHTTLTLESAEDSFKTHNLSINGNEESSFWLPLYGNMCCRLVAQ
PACMAEDAFAGFLNQQQMVEGLISWRRLYCVLRGGKLYCFYSPEEIEAKVEPALVVPINKETRIRAMDKD
AKKRIHNFSVINPVPGQAITQIFAVDNREDLQKWMEAFWQHFFDLSQWKHCCEELMKIEIMSPRKPPLFL
TKEATSVYHDMSIDSPMKLESLTDIIQKKIEETNGQFLIGQHEESLPPPWATLFDGNHQMVIQKKVLYPA
SEPLHDEKGKKRQAPLPPSDKLPFSLKSQSNTDQLVKDNWGKTSVSQTSSLDTKLSTLMHHLQKPMAAPR
KLLPARRNRLSDGEHTDTKTNFEAKPVPAPRQKSIKDILDPRSWLQAQV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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