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Report for CCDS72426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72426.1 Public Mus musculus X Pcdh11x 23 108 98 CCDS HistoryNCBI Gene:245578Re-query CCDS DB by CCDS ID:72426.1Re-query CCDS DB by GeneID:245578See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113358.9 ENSMUSP00000108985.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113358.9Link to Ensembl Protein Viewer:ENSMUSP00000108985.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113358Re-query CCDS DB by Protein ID:ENSMUSP00000108985
Original member NCBI NM_001271810.1 NP_001258739.1 Updated not alive Link to Nucleotide Sequence:NM_001271810.1Link to Protein Sequence:NP_001258739.1Re-query CCDS DB by Nucleotide ID:NM_001271810Re-query CCDS DB by Protein ID:NP_001258739
Current member NCBI NM_001271810.2 NP_001258739.1 Accepted alive Link to Nucleotide Sequence:NM_001271810.2Link to Protein Sequence:NP_001258739.1Re-query CCDS DB by Nucleotide ID:NM_001271810Re-query CCDS DB by Protein ID:NP_001258739Link to BLAST:NP_001258739.1

Chromosomal Locations for CCDS 72426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 120364830 120365369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120399402 120401897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120594705 120594785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120726501 120726699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 120905698 120906344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3963 nt):
ATGGACTTGTTGTCCGGGACGTATATATTTGCGGTCCTGTTAGCATGCGTCGTGTTTCAGTCTGGCGCCC
AGGAGAAGAATTATACAGTCCGAGAAGAAATGCCAGAAAACGTCCTGATAGGCGACTTGTTGAAAGACCT
CAACTTGTCGCTTATTCCCGACAAGTCCTTAACCACTCCTATGCAGTTCAAATTAGTTTACAAAACCGGG
GATGTACCATTGATTCGCATTGAAGAGGGTACTGGAGAGATCTTCACTACTGGTGCACGCATTGATCGTG
AGAAATTATGTGCTGGAATCGTGTTGGATGCCCGTTGCTTTTACGAAGTGGAGGTTGCTGTTTTGCCGGA
TGAAATATTTCGATTGGTTAAGATACGCTTTCTGATTGAAGACATAAATGATAATGCACCGTTATTCCCA
ACAACTGTCATCAACATATCAATTCCGGAGAACTCGGCTATAAACTCTCGATATTCTCTTCCAGCAGCCA
TTGATCCTGACATTGGAATAAATGGAGTCCAAAATTACCAACTAATTAAGAGTCAAAATATTTTCGGACT
TGATGTCATTGAAACACCAGAAGGAGACAAGATGCCCCAACTGATTGTTCAAAAGGAGTTAGATAGAGAA
GAGAAGGATACCTATGTGATGAAAGTAAAAGTTGAAGATGGTGGCTTTCCTCAAAGATCCAGTACAGCTA
TTTTGCAAGTAAGTGTTGCTGATACAAACGACAATCACCCAATCTTCATAGAAAAGGAAATTGAAGTCAG
TATACCAGAAAATGCTCCTATAGGTTCTTCAGTGACACAGCTCCATGCCACAGATGCAGATATAGGTGAG
AATGCCAGAATTCACTTTTATTTCAGCAACCTAGTCTCCAACATCGCTAAGAGACTGTTTCATCTAAACA
CCACTACTGGACTTATCACTGTCAAAGAACCACTGGATAGGGAAGAATCACCAAGTCACAAGTTATTGGT
TTTGGCAACTGATGGTGGATCAACACCAGCAAGAGCAACGGTGCTGGTAAATGTCACAGATATCAATGAT
AATGTCCCATCAATTGACATAAGATACATTGTCAATCCAACCAATGGCACTGTGCTTCTTTCAGAGAATG
CTCCACTTAACACTAAAATTGCTCTCATAACTGTGATGGATAAGGATTCTGAACATAATGGTAGGGTGAC
ATGCTTCACAGATCATGAAGTTCCTTTCAGATTGCGACCAGTATTCAGTAATCAGTTTCTCTTGGAGACT
GCTGCATTTCTTGACTTTGAGTCCACAAGAGAATATGCCATAAAATTACTAGCCGCTGATGCTGGCAAAC
CTCCTTTGAATCAGTCATCCATGCTCCTGATCAAAGTAAAAGATGAAAATGACAATGCTCCAGTTTTCAC
CCAGTCTTTCATAAGCCTTTCTGTTCCTGAGAATAACTCTCCTGGTGCACAGTTGACAAAAATCAGTGCA
ACAGATGCAGACAGTGGACAGAATGCTGAAATAAGCTACATGCTAGGTTTTGATGCACCACCTGAATTCA
ATCTGGATCAACGTACTGGCATCCTGACTGCAGTGAAGAAACTAGATAGGGAAAAACAGGAAAAGTATTA
CTTTACAGTTTTGGCACAGGACAATGGAATTCCACCCTTAATGTCCAATGCCACTGTATTTGTGACTGTT
CTTGACCAGAATGATAATAGCCCAATTTTCACTCATAATGAATATAACTTCTATGTTCCTGAAAGCCTTC
CAAAACATGGCACAGTAGGGCTAATAACTGTGACTGATCCTGATTACGGAGAGAATTCTGCAGTTACCCT
CTCCATCTTAGATGTGAATGATCAATTCACTATTGATCCACAGTCTGGTGTCATCAGGCCAAATATTTCA
TTTGACAGAGAAAGACAAGAATCCTATACTTTCTATGTAAAAGCTGAGGATGGTGGTAGGGTATCACGTT
CTTCAACTGCTAGAGTAACCATAAATGTGGTTGATGTCAATGATAACAAACCAATTTTTATTGACCCTCC
TTCCAATTACTCCTTTGAATGGGTTCTACCATCCACAAACCCTGGCACAGTTGTCTTCAAGGTTGTTGCA
ATTGACGATGATATTGGCATGAATGCAGAGGTTCTTTACAGCATTGTTGGAGGAAATACAAAAGGACTGT
TTATGATTGAACAAACATCAGGTAACATCACATTGAAGGAGAAGTGCATGGTTTCAGATCTTGGTTTACA
CCGAGTCATAGTCAAAGCTAATGATTTAGGACAACCTGATTCTCTCTTCAATGTTGTAAATGTCAATTTC
TTTATAAATGAGTCCGTGCCCAATGCCACACTGATTTATGAACTGGTGCGCAGAAGCATTGATGCACCTG
CCAATCAAAATACTGAAACAACCAGTGCATCCTCACCAACCACTGACTATGTCAAGATCATGGTTGCCAT
TGTGGCTGGCACCATAACTGTTGTCCTAGTTATTTTCATCACTGCTGTAGTAAGATGCCGCCAACCACCA
CATCTTAAGGCTTCTCAGAAAAACAAACAGAATTCTGAGTGGGTTACTCCAAACCCAGAAAACAGGCAGA
TGATTATGATGAAGAAGAAGAAGAAAAAGAAGAAGAAGCATCCCCCCAAGAACTTGCTGCTTAATTTTGT
CACTATTGAAGAAGCAAAGCCAGATGACGGTGAAAATGAGAGAAACAGTGTCACACTAGATCTTCCAATT
GAGCTGGAAGAGCAAACCATGGGCAAATACAACTGGGGCACTACACCTACTACTTTCAAACCTGATAGCC
CTGATTTGGCTCGACACTACAAATCGGCCTCTCCTCAGCCTGCATTCCAGATCCAGCCTGAAACGCCCCT
GAACTCAAAGCACCACATCATTCAGGAACTGCCTCTTGATAATACCTTCGTTGGCTGTGATTCCATCTCC
AAGTGCTCCTCCAGCAGTTCTGATCCCTACAGTGTTTCTGAGTGTAGCTATCCAGTGACAACTTTCAAGG
CCCCTGTGTCTGTGCATATCAGACCGACAATGAAGGAGGTGGTAAGATCTCACACACCCATGAAAGAGGC
AACCACTGTGGAAATCTGGACTCATCCACATCCACAGTCCCAGAGACGTGTCACATTTCACCTACCAGAA
GGCTCTCAGGAAAGCATCAGTGATGGTGGATTGGGAGACCACGATGCAGGCAGCCTTCCCAGTACATCCC
ATGCACTGCCTCTTGGCTATCCTCAGGAAGAGTATTTTGATCATGCTGCACCAAACAACCGCACTGAAGG
GGATGGCAACTCTGATCCTGAATCTACTGCAGAAATAACAGTGCAGCCAACTGTGGAAGAAGCCTCTGAT
ACCTGTACTCAAGAATGCCTCATCTTGGGACACTCTGACTCCTGCTGGATGCCAGCTACTTTGACCAATC
CTAGCCCTTCACAGATAAAGACCTCTGCTATCTGCCACAGCCCACCCAGGCCCCGCTTGTCAGTTCGTCG
CTACAGCCCTCCAGTGACACAGACGGTCACTATTTGCCACAGCCCCCCTGTGACCCAAGCTATTGCACTG
TGTCACAGCCCTCCACCAGTACAGGTTACTGTACCCCGCCATAGTCCACCACCAGCACAGGCCTCTGCAG
TCAGCTACAGCCCAACTCTAGTACAGGCTGTGGTAATTCACCACAGTCCTCCTCTGCCACAGGCTGCCAC
ACACCATCGCACTCAGGCACAACCACCAATGGGTTTGCAGCAGGGATGGGTGCAGGGTGCTGGAGCAGAT
GGACTGTATCCTATTGATCAGGGAGTACAGGGCAGTACAAGAGCTCAGTTTTACACCATGGCTGAAAGAT
TTCATCCCGATGATGACTCAATTAAAGTCATTCCCTTGACCACCTTTACTTCAGGTCAACAGGCCAGATC
CTCAAGAGGTGATTCTCCAATCATAGAGGAACACCCCTTGTAA

Translation (1320 aa):
MDLLSGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFKLVYKTG
DVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRLVKIRFLIEDINDNAPLFP
TTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNIFGLDVIETPEGDKMPQLIVQKELDRE
EKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNHPIFIEKEIEVSIPENAPIGSSVTQLHATDADIGE
NARIHFYFSNLVSNIAKRLFHLNTTTGLITVKEPLDREESPSHKLLVLATDGGSTPARATVLVNVTDIND
NVPSIDIRYIVNPTNGTVLLSENAPLNTKIALITVMDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLET
AAFLDFESTREYAIKLLAADAGKPPLNQSSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISA
TDADSGQNAEISYMLGFDAPPEFNLDQRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPLMSNATVFVTV
LDQNDNSPIFTHNEYNFYVPESLPKHGTVGLITVTDPDYGENSAVTLSILDVNDQFTIDPQSGVIRPNIS
FDRERQESYTFYVKAEDGGRVSRSSTARVTINVVDVNDNKPIFIDPPSNYSFEWVLPSTNPGTVVFKVVA
IDDDIGMNAEVLYSIVGGNTKGLFMIEQTSGNITLKEKCMVSDLGLHRVIVKANDLGQPDSLFNVVNVNF
FINESVPNATLIYELVRRSIDAPANQNTETTSASSPTTDYVKIMVAIVAGTITVVLVIFITAVVRCRQPP
HLKASQKNKQNSEWVTPNPENRQMIMMKKKKKKKKKHPPKNLLLNFVTIEEAKPDDGENERNSVTLDLPI
ELEEQTMGKYNWGTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSKHHIIQELPLDNTFVGCDSIS
KCSSSSSDPYSVSECSYPVTTFKAPVSVHIRPTMKEVVRSHTPMKEATTVEIWTHPHPQSQRRVTFHLPE
GSQESISDGGLGDHDAGSLPSTSHALPLGYPQEEYFDHAAPNNRTEGDGNSDPESTAEITVQPTVEEASD
TCTQECLILGHSDSCWMPATLTNPSPSQIKTSAICHSPPRPRLSVRRYSPPVTQTVTICHSPPVTQAIAL
CHSPPPVQVTVPRHSPPPAQASAVSYSPTLVQAVVIHHSPPLPQAATHHRTQAQPPMGLQQGWVQGAGAD
GLYPIDQGVQGSTRAQFYTMAERFHPDDDSIKVIPLTTFTSGQQARSSRGDSPIIEEHPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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