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Report for CCDS72419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72419.1 Public Mus musculus X Pbdc1 23 108 98 CCDS HistoryNCBI Gene:67683Re-query CCDS DB by CCDS ID:72419.1Re-query CCDS DB by GeneID:67683See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119477.1 ENSMUSP00000113288.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119477.1Link to Ensembl Protein Viewer:ENSMUSP00000113288.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119477Re-query CCDS DB by Protein ID:ENSMUSP00000113288
Original member Current member NCBI NM_001281871.1 NP_001268800.1 Accepted alive Link to Nucleotide Sequence:NM_001281871.1Link to Protein Sequence:NP_001268800.1Re-query CCDS DB by Nucleotide ID:NM_001281871Re-query CCDS DB by Protein ID:NP_001268800Link to BLAST:NP_001268800.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268800.1 137 Q9D0B6-2 137 100% 0 0

Chromosomal Locations for CCDS 72419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 105079814 105079843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105079954 105080019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105081371 105081430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105081938 105082078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105082694 105082805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 105116314 105116318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (414 nt):
ATGGATGCTGCCGGCGAAAGCGAAGAGCCGGTCTCTGGGGAAGCGTTGTCCATCGCCCATGCGCTCTCTC
ACCCTCCGGAGTCATATGGCAACGACCCTGATATTGAAATGGCTTGGGCCATTCGAGCAATGCAGCATGC
TGAAGTCTATTATAAACTGATTTCATCAGTTGACCCACAGTTTCTGAAACTCACCAAAGTAGATGACCAA
ATCTACTCTGAGTTCCGTGAGATTTTTGAGACACTCAGGGTAGATGTATTGGACCCAGAAGAACTCAAAT
CAGAATCAGCTAAAGAAAAGTGGAGACCATTCTGCTTAAAATTTGAAGGGATCGTAGAAGATTATAACTA
CGGGACTTTACTGCGACTGGATTGTTCCCAGGGCTACACTGAAGAGAACACCATCTTTGCATGA

Translation (137 aa):
MDAAGESEEPVSGEALSIAHALSHPPESYGNDPDIEMAWAIRAMQHAEVYYKLISSVDPQFLKLTKVDDQ
IYSEFREIFETLRVDVLDPEELKSESAKEKWRPFCLKFEGIVEDYNYGTLLRLDCSQGYTEENTIFA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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