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Report for CCDS72376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
72376.1 Public Mus musculus X Slc25a14 23 108 98 CCDS HistoryNCBI Gene:20523Re-query CCDS DB by CCDS ID:72376.1Re-query CCDS DB by GeneID:20523See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 72376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134257.7 ENSMUSP00000120332.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134257.7Link to Ensembl Protein Viewer:ENSMUSP00000120332.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000134257Re-query CCDS DB by Protein ID:ENSMUSP00000120332
Original member NCBI NM_001290703.1 NP_001277632.1 Updated not alive Link to Nucleotide Sequence:NM_001290703.1Link to Protein Sequence:NP_001277632.1Re-query CCDS DB by Nucleotide ID:NM_001290703Re-query CCDS DB by Protein ID:NP_001277632
Current member NCBI NM_001290703.2 NP_001277632.1 Accepted alive Link to Nucleotide Sequence:NM_001290703.2Link to Protein Sequence:NP_001277632.1Re-query CCDS DB by Nucleotide ID:NM_001290703Re-query CCDS DB by Protein ID:NP_001277632Link to BLAST:NP_001277632.1
Original member NCBI NM_001290704.1 NP_001277633.1 Updated not alive Link to Nucleotide Sequence:NM_001290704.1Link to Protein Sequence:NP_001277633.1Re-query CCDS DB by Nucleotide ID:NM_001290704Re-query CCDS DB by Protein ID:NP_001277633
Current member NCBI NM_001290704.2 NP_001277633.1 Accepted alive Link to Nucleotide Sequence:NM_001290704.2Link to Protein Sequence:NP_001277633.1Re-query CCDS DB by Nucleotide ID:NM_001290704Re-query CCDS DB by Protein ID:NP_001277633Link to BLAST:NP_001277633.1

Chromosomal Locations for CCDS 72376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48629282 48629345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48630889 48631036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48634757 48634851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48637390 48637475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48640235 48640330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48651930 48652054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48653367 48653502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48660689 48660769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48661883 48661924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTCTGGTCTGAACTGGAAACCTTTTGTGTATGGCGGCCTTGCCTCTATTGTTGCCGAGTTCGGCACTT
TCCCTGTGGATCTTACTAAAACACGGCTGCAAGTCCAAGGCCAGAGTATCGATGTTCGTTTCAAAGAAAT
AAAATATAGAGGGATGTTTCATGCCTTGTTCCGAATCTATAAAGAAGAAGGGATCTTGGCTCTGTATTCA
GGAATTGCCCCTGCGTTACTAAGACAGGCATCATATGGCACCATCAAAATTGGTATTTATCAAAGCTTGA
AGCGATTATTTGTAGAACGTTTGGAAGATGAGACTCTCCTAATTAACATGATCTGTGGGGTAGTGTCAGG
AGTGATTTCCTCTACTATTGCCAATCCCACTGATGTTCTAAAGATTCGAATGCAGGCTCAAGGAAGTTTG
TTCCAAGGGAGCATGATTGGCAGCTTCATTGACATATACCAGCAAGAAGGTACCAGGGGTCTGTGGAGGG
GTGTGGTCCCAACTGCTCAGCGTGCTGCAATCGTTGTGGGAGTAGAGCTGCCCGTTTATGATATTACCAA
GAAGCACCTGATAGTTTCAGGAATGCTGGGAGACACAATTTTAACACACTTTGTTTCCAGTTTCACCTGT
GGTTTGGCTGGGGCTCTGGCATCTAACCCTGTGGATGTGGTGAGAACTCGAATGATGAATCAGAGGGCAA
TAGTGGGACATGTGGACCTCTACAAGGGTACTTTGGATGGTATTTTAAAGATGTGGAAGCATGAGGGATT
TTTTGCACTCTATAAAGGATTTTGGCCAAACTGGCTTCGACTTGGACCCTGGAACATCATTTTTTTTATT
ACCTATGAGCAGCTCAAGAGGCTTCAGATCTAA

Translation (290 aa):
MSGLNWKPFVYGGLASIVAEFGTFPVDLTKTRLQVQGQSIDVRFKEIKYRGMFHALFRIYKEEGILALYS
GIAPALLRQASYGTIKIGIYQSLKRLFVERLEDETLLINMICGVVSGVISSTIANPTDVLKIRMQAQGSL
FQGSMIGSFIDIYQQEGTRGLWRGVVPTAQRAAIVVGVELPVYDITKKHLIVSGMLGDTILTHFVSSFTC
GLAGALASNPVDVVRTRMMNQRAIVGHVDLYKGTLDGILKMWKHEGFFALYKGFWPNWLRLGPWNIIFFI
TYEQLKRLQI


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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