NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7215.1 Public Homo sapiens 10 AGAP4 24 110 108 CCDS HistoryNCBI Gene:119016Re-query CCDS DB by CCDS ID:7215.1Re-query CCDS DB by GeneID:119016See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7215.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448048.7 ENSP00000392513.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448048.7Link to Ensembl Protein Viewer:ENSP00000392513.2Re-query CCDS DB by Nucleotide ID:ENST00000448048Re-query CCDS DB by Protein ID:ENSP00000392513
Original member Current member NCBI NM_133446.4 NP_597703.2 Accepted alive Link to Nucleotide Sequence:NM_133446.4Link to Protein Sequence:NP_597703.2Re-query CCDS DB by Nucleotide ID:NM_133446Re-query CCDS DB by Protein ID:NP_597703Link to BLAST:NP_597703.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_597703.2 663 Q96P64 663 100% 0 0

Chromosomal Locations for CCDS 7215.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 45825915 45827390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45828029 45828080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45831394 45831429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45834016 45834116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45841653 45841687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45844326 45844394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 45847125 45847347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1992 nt):
ATGGGGAACATACTGACCTGTCGTGTGCACCCTAGCGTCAGCCTCGAGTTTGACCAGCAGCAGGGGTCGG
TGTGTCCCTCTGAATCTGAGATCTATGAGGCAGGAGCTGGGGACAGGATGGCAGGAGCGCCCATGGCTGC
TGCTGTACAGCCTGCTGAGGTGACTGTTGAAGTTGGTGAGGACCTCCACATGCACCACGTTCGTGACCGG
GAGATGCCTGAAGCTTTGGAGTTTAACCCTTCTGCCAATCCAGAGGCAAGCACAATATTCCAGAGGAACT
CTCAAACAGATGTTGTAGAAATAAGAAGAAGCAACTGTACAAACCATGTATCTACTGTGCGTTTCAGTCA
ACAATACAGCTTGTGTTCGACAATATTCCTTGATGACAGCACAGCCATCCAGCATTATCTTACAATGACA
ATAATATCTGTGACCTTGGAGATACCTCATCATATCACACAAAGAGATGCAGATAGATCTTTGAGCATAC
CTGATGAACAGTTACACTCATTTGCGGTTTCCACCGTGCACATTATGAAGAAAAGAAATGGAGGTGGGAG
TTTAAATAACTATTCCTCCTCCATTCCATCGACTCCCAGCACCAGCCAGGAGGACCCTCAGTTCAGTGTT
CCTCCCACTGCCAACACACCCACCCCCGTTTGCAAGCGGTCCATGCGCTGGTCCAACCTGTTTACATCTG
AGAAAGGGAGTGACCCAGACAAAGAGAGGAAAGCCCCGGAGAATCATGCTGACACCATCGGGAGCGGCAG
AGCCATCCCCATTAAACAGGGCATGCTCTTAAAGCGAAGTGGGAAATGGCTGAAGACATGGAAAAAGAAA
TACGTCACCCTGTGTTCCAATGGCGTGCTCACCTATTATTCAAGCTTAGGTGATTATATGAAGAATATTC
ATAAAAAAGAGATTGACCTTCAGACATCTACCATCAAAGTCCCAGGAAAGTGGCCATCCCTAGCCACATC
GGCCTGCACACCCATCTCCACCTCTAAAAGCAATGGCCTATCCAAGGACATGGACACCGGGCTGGGTGAC
TCCATATGCTTCAGCCCCAGTATCTCCAGCACCACCAGCCCCAAGCTCAACCCGCCCCCCTCTCCTCATG
CCAATAAAAAGAAACACCTAAAGAAGAAAAGCACCAACAACTTTATGATTGTGTCTGCCACTGGCCAAAC
GTGGCACTTTGAAGCCACGACGTATGAGGAGCGGGATGCCTGGGTCCAAGCCATCCAGAGCCAGATCCTG
GCCAGCCTGCAGTCATGCGAGAGCAGTAAAAGCAAGTCCCAGCTGACCAGCCAGAGCAAGGCCATGGCCC
TGCAGTCGATCCAAAACATGCGTGGGAACGCCCACTGTGTGGACTGTGAGACCCAGAATCCTAAGTGGGC
CAGTTTGAACTTGGGAGTCCTCATGTGTATTGAATGCTCAGGAATCCACCGCAGTCTTGGCACCCGCCTT
TCCCGTGTGCGATCTCTGGAGCTGGATGACTGGCCAGTTGAGCTCAGGAAGGTTATGTCATCTATTGGCA
ATGACCTAGCCAACAGCATCTGGGAAGGGAGCAGCCAGGGGCAGACAAAACCCTCAGAAAAGTCCACGAG
GGAAGAGAAGGAACGGTGGATCCGTTCCAAATATGAGGAGAAGCTCTTTCTGGCCCCACTACCCTGCACT
GAGCTGTCCCTGGGCCAGCAGCTGCTGCGGGCCACCGCTGATGAGGACCTGCAGACAGCCATCCTGCTGC
TGGCACATGGCTCCCGTGAGGAGGTGAACGAGACCTGTGGGGAGGGAGACGGCTGCACGGCGCTCCATCT
GGCCTGCCGCAAGGGGAATGTGGTCCTGGCGCAGCTCCTGATCTGGTACGGGGTGGACGTCATGGCCCGA
GATGCCCACGGGAACACAGCGCTGACCTACGCCCGGCAGGCCTCCAGCCAGGAGTGCATCAACGTGCTTC
TGCAGTACGGCTGCCCCGACAAGTGTGTGTAG

Translation (663 aa):
MGNILTCRVHPSVSLEFDQQQGSVCPSESEIYEAGAGDRMAGAPMAAAVQPAEVTVEVGEDLHMHHVRDR
EMPEALEFNPSANPEASTIFQRNSQTDVVEIRRSNCTNHVSTVRFSQQYSLCSTIFLDDSTAIQHYLTMT
IISVTLEIPHHITQRDADRSLSIPDEQLHSFAVSTVHIMKKRNGGGSLNNYSSSIPSTPSTSQEDPQFSV
PPTANTPTPVCKRSMRWSNLFTSEKGSDPDKERKAPENHADTIGSGRAIPIKQGMLLKRSGKWLKTWKKK
YVTLCSNGVLTYYSSLGDYMKNIHKKEIDLQTSTIKVPGKWPSLATSACTPISTSKSNGLSKDMDTGLGD
SICFSPSISSTTSPKLNPPPSPHANKKKHLKKKSTNNFMIVSATGQTWHFEATTYEERDAWVQAIQSQIL
ASLQSCESSKSKSQLTSQSKAMALQSIQNMRGNAHCVDCETQNPKWASLNLGVLMCIECSGIHRSLGTRL
SRVRSLELDDWPVELRKVMSSIGNDLANSIWEGSSQGQTKPSEKSTREEKERWIRSKYEEKLFLAPLPCT
ELSLGQQLLRATADEDLQTAILLLAHGSREEVNETCGEGDGCTALHLACRKGNVVLAQLLIWYGVDVMAR
DAHGNTALTYARQASSQECINVLLQYGCPDKCV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH