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Report for CCDS7194.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7194.1 Public Homo sapiens 10 ZNF248 24 110 108 CCDS HistoryNCBI Gene:57209Re-query CCDS DB by CCDS ID:7194.1Re-query CCDS DB by GeneID:57209See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7194.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357328.8 ENSP00000349882.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357328.8Link to Ensembl Protein Viewer:ENSP00000349882.4Re-query CCDS DB by Nucleotide ID:ENST00000357328Re-query CCDS DB by Protein ID:ENSP00000349882
Original member Current member EBI ENST00000395867.8 ENSP00000379208.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000395867.8Link to Ensembl Protein Viewer:ENSP00000379208.3Re-query CCDS DB by Nucleotide ID:ENST00000395867Re-query CCDS DB by Protein ID:ENSP00000379208
Original member Current member NCBI NM_001267597.2 NP_001254526.1 Accepted alive Link to Nucleotide Sequence:NM_001267597.2Link to Protein Sequence:NP_001254526.1Re-query CCDS DB by Nucleotide ID:NM_001267597Re-query CCDS DB by Protein ID:NP_001254526Link to BLAST:NP_001254526.1
Original member Current member NCBI NM_001352469.2 NP_001339398.1 Accepted alive Link to Nucleotide Sequence:NM_001352469.2Link to Protein Sequence:NP_001339398.1Re-query CCDS DB by Nucleotide ID:NM_001352469Re-query CCDS DB by Protein ID:NP_001339398Link to BLAST:NP_001339398.1
Original member Current member NCBI NM_001352470.2 NP_001339399.1 Accepted alive Link to Nucleotide Sequence:NM_001352470.2Link to Protein Sequence:NP_001339399.1Re-query CCDS DB by Nucleotide ID:NM_001352470Re-query CCDS DB by Protein ID:NP_001339399Link to BLAST:NP_001339399.1
Original member Current member NCBI NM_001352471.2 NP_001339400.1 Accepted alive Link to Nucleotide Sequence:NM_001352471.2Link to Protein Sequence:NP_001339400.1Re-query CCDS DB by Nucleotide ID:NM_001352471Re-query CCDS DB by Protein ID:NP_001339400Link to BLAST:NP_001339400.1
Original member Current member NCBI NM_001352472.2 NP_001339401.1 Accepted alive Link to Nucleotide Sequence:NM_001352472.2Link to Protein Sequence:NP_001339401.1Re-query CCDS DB by Nucleotide ID:NM_001352472Re-query CCDS DB by Protein ID:NP_001339401Link to BLAST:NP_001339401.1
Original member Current member NCBI NM_001352473.2 NP_001339402.1 Accepted alive Link to Nucleotide Sequence:NM_001352473.2Link to Protein Sequence:NP_001339402.1Re-query CCDS DB by Nucleotide ID:NM_001352473Re-query CCDS DB by Protein ID:NP_001339402Link to BLAST:NP_001339402.1
Original member Current member NCBI NM_001352474.2 NP_001339403.1 Accepted alive Link to Nucleotide Sequence:NM_001352474.2Link to Protein Sequence:NP_001339403.1Re-query CCDS DB by Nucleotide ID:NM_001352474Re-query CCDS DB by Protein ID:NP_001339403Link to BLAST:NP_001339403.1
Original member Current member NCBI NM_021045.3 NP_066383.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021045.3Link to Protein Sequence:NP_066383.1Re-query CCDS DB by Nucleotide ID:NM_021045Re-query CCDS DB by Protein ID:NP_066383Link to BLAST:NP_066383.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254526.1 579 Q8NDW4-1 579 100% 0 0
NP_001339398.1 579 Q8NDW4-1 579 100% 0 0
NP_001339399.1 579 Q8NDW4-1 579 100% 0 0
NP_001339400.1 579 Q8NDW4-1 579 100% 0 0
NP_001339401.1 579 Q8NDW4-1 579 100% 0 0
NP_001339402.1 579 Q8NDW4-1 579 100% 0 0
NP_001339403.1 579 Q8NDW4-1 579 100% 0 0
NP_066383.1 579 Q8NDW4-1 579 100% 0 0

Chromosomal Locations for CCDS 7194.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 37831615 37833116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37837617 37837712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37837985 37838111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 37856296 37856310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAACAAATCCCAGGAACAAGTGTCATTCAAGGATGTATGTGTGGACTTCACTCAGGAAGAGTGGTATC
TGCTGGACCCTGCTCAGAAGATTCTATACAGAGATGTGATCCTGGAAAATTATAGCAATCTTGTCTCAGT
AGGGTATTGCATTACTAAACCAGAAGTGATCTTTAAGATCGAGCAAGGAGAAGAGCCCTGGATATTAGAA
AAAGGATTCCCAAGCCAGTGCCACCCAGAAAGGAAATGGAAAGTTGATGACGTGTTAGAGAGCAGCCAGG
AAAATGAAGATGACCATTTTTGGGAGCTTCTATTCCACAACAACAAAACAGTAAGTGTAGAAAATGGAGA
TAGAGGAAGCAAAACTTTCAATTTGGGCACAGACCCTGTTTCTTTAAGAAATTATCCCTATAAAATATGT
GACTCATGTGAAATGAATTTGAAAAATATTTCGGGCTTAATTATTAGTAAAAAGAACTGTTCCAGAAAGA
AGCCTGATGAGTTTAATGTATGTGAGAAATTGCTCCTTGATATTAGGCATGAGAAAATCCCTATTGGAGA
GAAGTCTTATAAATATGATCAAAAAAGGAATGCCATTAATTATCACCAGGATCTCAGTCAGCCAAGTTTT
GGCCAATCTTTTGAGTATAGTAAAAATGGACAAGGCTTCCATGATGAGGCAGCATTTTTTACAAATAAGA
GATCTCAGATAGGAGAGACAGTCTGTAAATATAACGAATGTGGAAGAACCTTCATTGAAAGTTTAAAGCT
GAATATATCTCAAAGACCTCATTTGGAAATGGAGCCGTATGGATGCAGTATTTGCGGGAAGTCCTTCTGC
ATGAATTTAAGGTTTGGACATCAGAGAGCTCTTACAAAGGACAATCCTTATGAATATAATGAATATGGGG
AAATCTTCTGTGACAATTCAGCTTTCATTATCCATCAGGGAGCTTACACAAGAAAGATTCTCCGTGAATA
TAAAGTGAGTGACAAAACCTGGGAAAAGTCAGCTCTCTTAAAACATCAAATAGTACACATGGGGGGAAAG
TCTTATGATTACAATGAAAATGGGAGTAATTTCAGCAAGAAGTCACATCTTACCCAGCTTCGGAGAGCTC
ACACAGGAGAAAAAACCTTTGAATGTGGTGAATGTGGGAAAACCTTCTGGGAGAAGTCAAACCTCACTCA
ACATCAGAGAACACACACAGGAGAGAAGCCCTATGAATGTACTGAATGTGGGAAAGCCTTTTGCCAGAAA
CCACACCTGACCAACCATCAGCGAACACATACAGGAGAAAAACCCTATGAATGTAAGCAATGTGGAAAAA
CATTCTGTGTGAAGTCAAACCTCACTGAACATCAGAGAACACACACAGGGGAGAAGCCCTATGAATGTAA
TGCATGTGGGAAATCCTTCTGCCACAGATCAGCCCTCACTGTGCATCAGAGAACACACACAGGGGAGAAA
CCGTTTATATGTAATGAATGTGGAAAATCCTTCTGTGTGAAGTCAAACCTCATTGTACATCAAAGAACTC
ACACTGGGGAGAAACCATATAAGTGTAATGAATGTGGGAAAACCTTCTGTGAAAAATCAGCTCTCACTAA
ACATCAGAGGACTCACACAGGGGAGAAGCCGTATGAGTGTAATGCATGTGGGAAGACCTTTAGTCAGAGG
TCAGTGCTCACCAAACATCAGAGAATTCACACAAGGGTGAAAGCTCTTTCAACATCCTGA

Translation (579 aa):
MNKSQEQVSFKDVCVDFTQEEWYLLDPAQKILYRDVILENYSNLVSVGYCITKPEVIFKIEQGEEPWILE
KGFPSQCHPERKWKVDDVLESSQENEDDHFWELLFHNNKTVSVENGDRGSKTFNLGTDPVSLRNYPYKIC
DSCEMNLKNISGLIISKKNCSRKKPDEFNVCEKLLLDIRHEKIPIGEKSYKYDQKRNAINYHQDLSQPSF
GQSFEYSKNGQGFHDEAAFFTNKRSQIGETVCKYNECGRTFIESLKLNISQRPHLEMEPYGCSICGKSFC
MNLRFGHQRALTKDNPYEYNEYGEIFCDNSAFIIHQGAYTRKILREYKVSDKTWEKSALLKHQIVHMGGK
SYDYNENGSNFSKKSHLTQLRRAHTGEKTFECGECGKTFWEKSNLTQHQRTHTGEKPYECTECGKAFCQK
PHLTNHQRTHTGEKPYECKQCGKTFCVKSNLTEHQRTHTGEKPYECNACGKSFCHRSALTVHQRTHTGEK
PFICNECGKSFCVKSNLIVHQRTHTGEKPYKCNECGKTFCEKSALTKHQRTHTGEKPYECNACGKTFSQR
SVLTKHQRIHTRVKALSTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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