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Report for CCDS71899.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71899.1 Public Mus musculus 7 Vmn1r245 23 108 98 CCDS HistoryNCBI Gene:435946Re-query CCDS DB by CCDS ID:71899.1Re-query CCDS DB by GeneID:435946See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 71899.1
This gene represents one of numerous vomeronasal 1 receptor genes that are present in the mouse genome. This family member lacks transcript support, and therefore this CCDS representation is inferred based on paralogous alignments.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 71899.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173886.1 ENSMUSP00000133606.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173886.1Link to Ensembl Protein Viewer:ENSMUSP00000133606.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173886Re-query CCDS DB by Protein ID:ENSMUSP00000133606
Original member Current member NCBI NM_001167146.1 NP_001160618.1 Accepted alive Link to Nucleotide Sequence:NM_001167146.1Link to Protein Sequence:NP_001160618.1Re-query CCDS DB by Nucleotide ID:NM_001167146Re-query CCDS DB by Protein ID:NP_001160618Link to BLAST:NP_001160618.1

Chromosomal Locations for CCDS 71899.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 20544834 20545757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGTCTGCTCATGGTAACTCCCTGAAAACCACTGAGGAAGTGGCTCTTCAGATTCTCTTGCTTTGCCAGT
TT
GGGGTTGGGACTGTGGCCAATGTCTTTCTGTTTGTCCATAATTTCTCTCCAGTCTTGACTGGTTCTAA
A
CAGAGGCCCAGACAGGTGATTTTAAGCCACATGGCTGTGGCCAATGCCTTGACTCTATTCCTCACTATA
TTT
CCAAACAACATGATGGCTTTTGCTCCCAAAACTCCTCCAAATGAACTCAAATGTAAATTAGAATCCT
TC
AGTCACCTGGTGGCAAGAAGCACAAACTTGTGTTCCACCTGTGTCCTGAGTGTCCATCAGTTTGTCAC
T
CTGGTTCCTCTTAATAGAGGGAAAGGTAAACTTGTACTCAGAGCAAGTGTCACAAACATGGCAAGTTAT
TCT
TCTTACAGTTATTGGTTTTTCAGTGTCTTAAGTAACATCCACATTCCAATTAAGTTCAGTGGTCCAC
AG
ATAGCAGACAATAACACTGACTCGAAAAGAAAGTTGTTCTGTTCCTCTTCCGGATTCAGTGTGGGCAT
T
GTCTTCTTGCAGTTTGCGTACGATGCCACATTCATGAGCATCATGGTCTGGACCAGTGTCTCCATGGTA
CTT
CTCCTCCATAGACATCGCCAGCGAATGCAGCACATCCTCACTCCCAATCAGAACCCCAGAGGCCAAG
CT
GAGTCCAAAGCAACCCATACTATCCTGATCCTGGTGTTTACATTTGTTAGCTTTTATCTTCTAAATTG
T
ATTTGTATCATGTTACATGCCCTTTTTATGCATTCTCATTTCTTCGTAAGGCTTGTCAGTGAGATTTTA
ACT
GCGGTCTTCCCCAGTATCTCTCCTTTACTGTTGATCTTCAGAGATCCCAAGGATCCTTGTTCTGTGC
TC
TTAAACTATTGA


Translation (307 aa):
MSAHGNSLKTTEEVALQILLLCQFGVGTVANVFLFVHNFSPVLTGSKQRPRQVILSHMAVANALTLFLTI
F
PNNMMAFAPKTPPNELKCKLESFSHLVARSTNLCSTCVLSVHQFVTLVPLNRGKGKLVLRASVTNMASY
S
SYSYWFFSVLSNIHIPIKFSGPQIADNNTDSKRKLFCSSSGFSVGIVFLQFAYDATFMSIMVWTSVSMV
L
LLHRHRQRMQHILTPNQNPRGQAESKATHTILILVFTFVSFYLLNCICIMLHALFMHSHFFVRLVSEIL
T
AVFPSISPLLLIFRDPKDPCSVLLNY




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser