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Report for CCDS71679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71679.1 Public Mus musculus 5 Styxl1 23 108 98 CCDS HistoryNCBI Gene:76571Re-query CCDS DB by CCDS ID:71679.1Re-query CCDS DB by GeneID:76571See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 71679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111161.8 ENSMUSP00000106791.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111161.8Link to Ensembl Protein Viewer:ENSMUSP00000106791.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111161Re-query CCDS DB by Protein ID:ENSMUSP00000106791
Original member Current member EBI ENSMUST00000178515.7 ENSMUSP00000137191.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178515.7Link to Ensembl Protein Viewer:ENSMUSP00000137191.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178515Re-query CCDS DB by Protein ID:ENSMUSP00000137191
Original member Current member NCBI NM_001289556.1 NP_001276485.1 Accepted alive Link to Nucleotide Sequence:NM_001289556.1Link to Protein Sequence:NP_001276485.1Re-query CCDS DB by Nucleotide ID:NM_001289556Re-query CCDS DB by Protein ID:NP_001276485Link to BLAST:NP_001276485.1

Chromosomal Locations for CCDS 71679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135747767 135747898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135753832 135753944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135755407 135755504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135756999 135757144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135759129 135759173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGTACCACTTCTTCCGGACTCAGAAGATCATCTGGATGCCCCAGGAACTGGATGCCTTCCAGCCATACC
CAGTTGAGATACTTCCAGGCAGAGTCTACCTGGGCAAAATCAGTCAAGCCTGCAATGCTAAGATGCACAA
GGACTTGAAAATTAAAGCACATGTCAATATTTCCATGGAGACAACACCCTATTTTATAGGCAATGCAGAC
AAGCTCTTACATATCAAGCTTGAGGATTCTCCAGACACCTTGCTTTTTGACTATTTCCGCCACATCTGTC
ACTTTATAGAACTTCACCTCAGGCTCCACTCTGTCGTTCTGGTCTTTTCCACCCGGGGCATCAGCCGCAG
CGTTGCTGCTGTGGTGGCCTTACTCATGCATTATAATGAGGAGACGCTGAAGAGGTCCTGGGCCCAAGTG
AAGAAATGCAAAACCAACATGCGTCCGAATCGGGCCTTCGTGGCTCAGCTGCTGGAGTGGGAGAAAGTCC
TCCATGGGGAATATCTCACAGACATCTCCGAGCCTATCTACTGA

Translation (177 aa):
MYHFFRTQKIIWMPQELDAFQPYPVEILPGRVYLGKISQACNAKMHKDLKIKAHVNISMETTPYFIGNAD
KLLHIKLEDSPDTLLFDYFRHICHFIELHLRLHSVVLVFSTRGISRSVAAVVALLMHYNEETLKRSWAQV
KKCKTNMRPNRAFVAQLLEWEKVLHGEYLTDISEPIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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