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Report for CCDS7161.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7161.1 Public Homo sapiens 10 WAC 24 110 108 CCDS HistoryNCBI Gene:51322Re-query CCDS DB by CCDS ID:7161.1Re-query CCDS DB by GeneID:51322See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7161.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000375664.8 ENSP00000364816.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375664.8Link to Ensembl Protein Viewer:ENSP00000364816.3Re-query CCDS DB by Nucleotide ID:ENST00000375664Re-query CCDS DB by Protein ID:ENSP00000364816
Original member Current member EBI ENST00000442148.6 ENSP00000400848.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000442148.6Link to Ensembl Protein Viewer:ENSP00000400848.2Re-query CCDS DB by Nucleotide ID:ENST00000442148Re-query CCDS DB by Protein ID:ENSP00000400848
Original member Current member EBI ENST00000679428.1 ENSP00000506445.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679428.1Link to Ensembl Protein Viewer:ENSP00000506445.1Re-query CCDS DB by Nucleotide ID:ENST00000679428Re-query CCDS DB by Protein ID:ENSP00000506445
Original member Current member EBI ENST00000679398.1 ENSP00000506624.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679398.1Link to Ensembl Protein Viewer:ENSP00000506624.1Re-query CCDS DB by Nucleotide ID:ENST00000679398Re-query CCDS DB by Protein ID:ENSP00000506624
Original member Current member NCBI NM_100264.3 NP_567822.1 Accepted alive Link to Nucleotide Sequence:NM_100264.3Link to Protein Sequence:NP_567822.1Re-query CCDS DB by Nucleotide ID:NM_100264Re-query CCDS DB by Protein ID:NP_567822Link to BLAST:NP_567822.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_567822.1 602 Q9BTA9-2 602 100% 0 0

Chromosomal Locations for CCDS 7161.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 28535619 28535757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28583399 28583505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28589736 28589851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28590720 28590832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28595733 28596041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28608186 28608431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28610699 28610821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28611774 28611922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28614567 28614685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28616173 28616362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28617657 28617784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 28619537 28619606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGCGAGACGCCGGAGATCCTTCACCACCAAATAAAATGTTGCGGAGATCTGATAGTCCTGAAAACAAAT
ACAGTGACAGCACAGGTCACAGTAAGGCCAAAAATGTGCATACTCACAGAGTTAGAGAGAGGGATGGTGG
GACCAGTTACTCTCCACAAGAAAATTCACACAACCACAGTGCTCTTCATAGTTCAAATTCACATTCTTCT
AATCCAAGCAATAACCCAAGCAAAACTTCAGATGCACCTTATGATTCTGCAGATGACTGGTCTGAGCATA
TTAGCTCTTCTGGGAAAAAGTACTACTACAATTGTCGAACAGAAGTTTCACAATGGGAAAAACCAAAAGA
GTGGCTTGAAAGAGAACAGAGACAAAAAGAAGCAAACAAGATGGCAGTCAACAGCTTCCCAAAAGATAGG
GATTACAGAAGAGAGGTGATGCAAGCAACAGCCACTAGTGGGTTTGCCAGTGGAATGGAAGACAAGCATT
CCAGTGATGCCAGTAGTTTGCTCCCACAGAATATTTTGTCTCAAACAAGCAGACACAATGACAGAGACTA
CAGACTGCCAAGAGCAGAGACTCACAGTAGTTCTACGCCAGTACAGCACCCCATCAAACCAGTGGTTCAT
CCAACTGCTACCCCAAGCACTGTTCCTTCTAGTCCATTTACGCTACAGTCTGATCACCAGCCAAAGAAAT
CATTTGATGCTAATGGAGCATCTACTTTATCAAAACTGCCTACACCCACATCTTCTGTCCCTGCACAGAA
AACAGAAAGAAAAGAATCTACATCAGGAGACAAACCCGTATCACATTCTTGCACAACTCCTTCCACGTCT
TCTGCCTCTGGACTGAACCCCACATCTGCACCTCCAACATCTGCTTCAGCGGTCCCTGTTTCTCCTGTTC
CACAGTCGCCAATACCTCCCTTACTTCAGGACCCAAATCTTCTTAGACAATTGCTTCCTGCTTTGCAAGC
CACGCTGCAGCTTAATAATTCTAATGTGGACATATCTAAAATAAATGAAGTTCTTACAGCAGCTGTGACA
CAAGCCTCACTGCAGTCTATAATTCATAAGTTTCTTACTGCTGGACCATCTGCTTTCAACATAACGTCTC
TGATTTCTCAAGCTGCTCAGCTCTCTACACAAGCCCAGCCATCTAATCAGTCTCCGATGTCTTTAACATC
TGATGCGTCATCCCCAAGATCATATGTTTCTCCAAGAATAAGCACACCTCAAACTAACACAGTCCCTATC
AAACCTTTGATCAGTACTCCTCCTGTTTCATCACAGCCAAAGGTTAGTACTCCAGTAGTTAAGCAAGGAC
CAGTGTCACAGTCAGCCACACAGCAGCCTGTAACTGCTGACAAGCAGCAAGGTCATGAACCTGTCTCTCC
TCGAAGTCTTCAGCGCTCAAGTAGCCAGAGAAGTCCATCACCTGGTCCCAATCATACTTCTAATAGTAGT
AATGCATCAAATGCAACAGTTGTACCACAGAATTCTTCTGCCCGATCCACGTGTTCATTAACGCCTGCAC
TAGCAGCACACTTCAGTGAAAATCTCATAAAACACGTTCAAGGATGGCCTGCAGATCATGCAGAGAAGCA
GGCATCAAGATTACGCGAAGAAGCGCATAACATGGGAACTATTCACATGTCCGAAATTTGTACTGAATTA
AAAAATTTAAGATCTTTAGTCCGAGTATGTGAAATTCAAGCAACTTTGCGAGAGCAAAGGATACTATTTT
TGAGACAACAAATTAAGGAACTTGAAAAGCTAAAAAATCAGAATTCCTTCATGGTGTGA

Translation (602 aa):
MRDAGDPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSYSPQENSHNHSALHSSNSHSS
NPSNNPSKTSDAPYDSADDWSEHISSSGKKYYYNCRTEVSQWEKPKEWLEREQRQKEANKMAVNSFPKDR
DYRREVMQATATSGFASGMEDKHSSDASSLLPQNILSQTSRHNDRDYRLPRAETHSSSTPVQHPIKPVVH
PTATPSTVPSSPFTLQSDHQPKKSFDANGASTLSKLPTPTSSVPAQKTERKESTSGDKPVSHSCTTPSTS
SASGLNPTSAPPTSASAVPVSPVPQSPIPPLLQDPNLLRQLLPALQATLQLNNSNVDISKINEVLTAAVT
QASLQSIIHKFLTAGPSAFNITSLISQAAQLSTQAQPSNQSPMSLTSDASSPRSYVSPRISTPQTNTVPI
KPLISTPPVSSQPKVSTPVVKQGPVSQSATQQPVTADKQQGHEPVSPRSLQRSSSQRSPSPGPNHTSNSS
NASNATVVPQNSSARSTCSLTPALAAHFSENLIKHVQGWPADHAEKQASRLREEAHNMGTIHMSEICTEL
KNLRSLVRVCEIQATLREQRILFLRQQIKELEKLKNQNSFMV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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