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Report for CCDS71533.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71533.1 Public Mus musculus 4 Plch2 23 108 98 CCDS HistoryNCBI Gene:269615Re-query CCDS DB by CCDS ID:71533.1Re-query CCDS DB by GeneID:269615See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71533.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105631.8 ENSMUSP00000101256.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105631.8Link to Ensembl Protein Viewer:ENSMUSP00000101256.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105631Re-query CCDS DB by Protein ID:ENSMUSP00000101256
Original member Current member NCBI NM_001113360.3 NP_001106831.1 Accepted alive Link to Nucleotide Sequence:NM_001113360.3Link to Protein Sequence:NP_001106831.1Re-query CCDS DB by Nucleotide ID:NM_001113360Re-query CCDS DB by Protein ID:NP_001106831Link to BLAST:NP_001106831.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106831.1 1501 A2AP18-1 1501 100% 0 0

Chromosomal Locations for CCDS 71533.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154983662 154984965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154986719 154987016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154989118 154989197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154989420 154989566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154989730 154989814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154989893 154990017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154990689 154990796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154991015 154991197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154991285 154991382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154992533 154992615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154992925 154993023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154996132 154996290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154998453 154998560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154998851 154999022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155000065 155000185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155000448 155000651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155000804 155000897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155002755 155002925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155006602 155006731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155006918 155007161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155008991 155009137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 155010639 155010984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4506 nt):
ATGGGCGGACTGGCCTGGGGACCATCCAGGGCCGCAGGCAGCAGTTGGGTCAATGCCAGTGGGACCTGGG
AACAGCCCTTGCGGGGCTTCAGTGGGCTCCAAGGAGGAAGACGAAGAGGTAGAGGAGAGAAGGGGATCCC
TGAGGAGCCCCTGTGCCAGCTGACACCTCAGCTTGGCCTGTCGCTGAGGGTCCCTTTTGGCTTGGGGGAC
TACGGCTTGGATATGCCTGGTCCCCAGCCGTCTGCTGCCAGCCAGACCACAGGAGCCGTGGCTTGCCTGG
CAGAGGTACTCCTCTGGGTTGGAGGGAGCGTGGTAGTGTCACCAAGATGGCAGCTCAGCCTTGTAGTGGA
GCGATGCATGAGTGCCATGCAAGAGGGGACCCAGATGGTGAAGCTCCGTGGCAGCTCCAAGGGATTGGTC
CGCTTCTACTACCTGGATGAGCACCGCTCCTGCCTCCGATGGCGTCCCTCCCGCAAGAACGAGAAAGCCA
AGATTTCCATCGACTCCATCCAGGAGGTGAGTGAGGGCCGGCAGTCTGAAATCTTCCAGCGCTACCCGGA
CAGCAGCTTTGACCCCAACTGCTGCTTCAGCATCTACCATGGCAGCCACAGAGAGTCGCTGGACTTGGTC
TCACCCAGCAGTGAAGAGGCACGTACCTGGGTCACCGGCCTTCGCTACCTCATGGCTGGCATCAGCGATG
AAGACAGCCTAGCCCGTCGCCAGCGTACCAGGGACCAGTGGCTGAAGCAGACGTTTGATGAGGCTGACAA
GAACGGGGACGGCAGCCTGAGCATCAGTGAGGTTCTGCAGCTGCTACATAAACTCAACGTGAACCTGCCC
CGGCAGAGGGTGAAACAGATGTTCAGGGAGGCGGACACAGATGACCATCAGGGGACATTAGGCTTTGAGG
AATTCTGCGCCTTCTACAAGATGATGTCTACCCGCCGAGACCTCTACCTGCTCATGCTGACCTACAGCAA
CCATAAGGACCACTTGGATGCCTCCGACCTGCAGCGCTTTCTGGAGGTGGAGCAGAAGATGAACGGTGTG
ACCCTGGAGAGCTGTCAGAACATCATTGAGCAGTTTGAGCCTTGCCTGGAAAATAAGAGCAAGGGGATGC
TGGGGATTGATGGCTTTACCAACTACACCCGGAGCCCCGCCGGTGACATCTTCAACCCTGAGCACAACAG
AGTGCACCAAGACATGACGCAGCCGCTGAGTCACTACTTCATCACCTCGTCCCACAACACCTACCTCGTG
GGTGACCAGCTCATGTCCCAGTCTCGGGTGGACATGTATGCCTGGGTCCTGCAGGCCGGCTGCCGCTGTG
TGGAGGTGGACTGCTGGGACGGGCCCGATGGAGAACCCATTGTCCATCATGGCTACACTCTGACCTCCAA
GATCCTTTTCAAAGATGTCATCGAAACCATCAACAAATACGCCTTCATCAAGAATGAGTACCCAGTGATC
CTGTCCATTGAGAACCACTGTAGTGTTGTTCAGCAGAAGAAGATGGCCCAGTATCTGACTGACATCCTCG
GGGACAAGCTGGACCTCTCCTCAGTGAGCAGCGAAGATGCCACCATGCTTCCATCTCCACAGATGCTCAA
GGGCAAGATCCTGGTGAAGGGGAAGAAGCTCCCTGCCAATATCAGTGAGGATGCAGAAGAAGGCGAAGTA
TCTGATGAGGACAGTGCTGATGAGATGGAGGATGACTGCAAGCTCCTCAATGGGGATGCCTCCACCAATC
GGAAGCGTGTGGAAAACATTGCAAAGAAGAAGCTGGATTCTCTGATCAAGGAGTCAAAGATCCGTGACTG
TGAAGACCCCAATGACTTCTCTGTGTCCACACTATCCCCCTCTGGAAAGCTTGGGCGCAAAGCAGAGGCC
AAGAAGGGTCAGAGCAAGGTTGAGGAAGACGTGGAGGCCGGGGAAGACAGCGGGGTGAGCAGGCAGAATA
GCCGCCTCTTCATGAGCAGCTTCTCCAAGCGCAAGAAAAAAGGCAGCAAGATAAAGAAGGTGGCCAGCGT
GGAAGAGGGGGACGAGACCCTGGACTCCCCAGGAAGCCAGAGCCGAGGGACTGCCCGGCAAAAGAAGACC
ATGAAGCTGTCACGAGCCCTCTCGGACCTAGTGAAATATACCAAGTCTGTGGGGACCCATGACGTGGAGA
TAGAGGTGGTATCTAGCTGGCAGGTGTCGTCCTTCAGTGAGACCAAGGCCCATCAGATCCTGCAGCAGAA
GCCCACCCAGTACCTGCGCTTCAACCAGCACCAGCTCTCGCGCATATACCCCTCCTCCTACCGTGTGGAC
TCCAGCAACTACAATCCACAACCCTTCTGGAACGCTGGTTGCCAGATGGTTGCCCTGAACTACCAGTCAG
AGGGGCGGATGCTACAGCTGAACAGGGCCAAGTTCAGCGCCAACGGTGACTGTGGCTACGTGCTCAAACC
CCAGTGCATGTGCCAGGGTGTCTTCAACCCCAACTCGGAGGATCCCCTGCCGGGGCAGCTCAAGAAGCAG
CTGGCCCTGAGGATCATCAGTGGCCAGCAGCTGCCCAAACCACGGGACTCGGTGCTGGGCGACCGTGGGG
AGATCATCGACCCCTTCGTGGAGGTGGAGGTCATTGGGCTCCCCGTGGACTGCAGCAAGGAGCAGACCCG
AGTGGTGGACGACAACGGATTCAACCCCATGTGGGAGGAGACACTGGTGTTCACCGTGCACATGCCAGAG
ATTGCGCTTGTACGCTTCCTGGTCTGGGACCATGACCCCATTGGACGTGACTTCATCGGCCAGAGGACAC
TAGCCTTCAGCAGCATAATGCCAGGCTACCGGCATGTGTACCTAGAAGGGATGGAAGAGGCCTCTATCTT
TGTTCATGTGGCTGTCAGTGACATTAGTGGTAAGGTCAAGCAGACTCTGGGTCTAAAAGGTCTCTTCCTC
CGAGGCACAAAGCCAGGCTCGCTGGACAGTCATGCTGCTGGACAGCCCCTCCCCCGGCCCTCCGTTAGCC
AGAGGCTCCTGCGGCGCACGGCCAGTGCCCCGACCAAAAGCCAGAAGCCAAGTCGCAAGGGCTTCCCAGA
GCTGGCCCTGGGCACACAGGACGCAGGCTCCGAGGGGGCAGCTGATGACGTGGCACCCTCTAGCCCCAAC
CCAGCTCTGGAGGCCCCTACTCAAGAGAGGTCAGGCAGCAGCAGCCCCCGAGATACTCGCCTCTTCCCCC
TGCAGCGGCCCATCTCCCCCCTGTGCAGCCTGGAACCCATTGCCGAGGAACCAGCCCTGGGCCCTGGCCT
CCCGTTACAGGCAGCTGCCCCCACAGGTCCATCTCAGGAAGGGTCCCAGTGCCCTGTAGGCCTGGGAGCC
AAAGTGACCAGCTCCCAGCAGACATCTCTGGGAGCTTTTGGAACCCTCCAGCTCAGGATTGGGGGCGGTA
GGGAAAACGAAGAGCCACCCCTCAGGCCACACAATGGTGGGATCTCCAGCGGGCCACGTGAGGGGACTTC
TGGAAGACAGACAGACAGCAAGAGCCGCTCCCGGGTCCCGGGCCACTTGCCAGTGGTTAGGAGGGCCAAG
AGTGAGGGCCAGGTGCTCTCGGAGCTCTCTCCCACACCTGCAGTGTACTCGGATGCCACGGGCACTGACA
GGTTATGGCAGCGGCTGGAGCCTGGGAGCCACAGGGACAGTGTCTCCTCATCCTCCAGCATGTCCTCCAA
CGACACCGTCATAGACCTATCACTGCCCAGCCTCGGCCTCTGCCGCAGCCGAGAGAGCATTCCAGGGGTC
TCTCTTGGACGCCTAACCTCACGGCCCTGCTTAGCCTCAGCTGCCCGTCCTGACCTGCCTCCTGTGACCA
AGAGCAAATCGAACCCCAACCTGCGGGTTGCGGGTGGGCTGCCTACTGCACCCGACGAGCTGCAGCCCCG
GCCTCTTGCCCCGCGGCTGACCGGCCACCATCCACGGCCACCGTGGCATCACCTCACCCTGGTGGGCCTG
CGGGACTGCCCAGTGTCTGCTAAGTCCAAGAGTCTGGGAGACCTGACAGCTGACGACTTTGCTCCCAGCT
TTCAGGGCAGCACCAGCAGCCTGAGCTGCGGCCTAGGCTCCCTGGGTGTGGCGCATCAGGTGCTGGAGCC
GGGAATACGGCGAGATGCTCTCACGGAGCAGCTACGCTGGCTCACCGGCTTCCAGCAGGCTGGGGACATC
ACGTCGCCCACCAGCTTGGGCCCAGCTGGGGACGGGTCTGTAGGGGGCCCCAGCTTCCTGAGGCGTTCCT
CCTCTCGGAGCCAGAGCCGCGTGCGCGCTATTGCCAGCCGAGCCCGCCAAGCGCAGGAGCGCCAGCAGAG
GCTGAGAGGCCAGGACTCACGGGGTCCCCCAGAGGAGGAGCGGGGCACCCCTGAGGGTGCCTGTTCTGTA
GGCCATGAGGGCTGTGTGGATGTGCCAATGCCTGCCAAGGGAGCCCCTGAGCAGGTGTGTGGTGCTGCTG
ATGGCCAGCTGCTGCTCAGGCTCTGA

Translation (1501 aa):
MGGLAWGPSRAAGSSWVNASGTWEQPLRGFSGLQGGRRRGRGEKGIPEEPLCQLTPQLGLSLRVPFGLGD
YGLDMPGPQPSAASQTTGAVACLAEVLLWVGGSVVVSPRWQLSLVVERCMSAMQEGTQMVKLRGSSKGLV
RFYYLDEHRSCLRWRPSRKNEKAKISIDSIQEVSEGRQSEIFQRYPDSSFDPNCCFSIYHGSHRESLDLV
SPSSEEARTWVTGLRYLMAGISDEDSLARRQRTRDQWLKQTFDEADKNGDGSLSISEVLQLLHKLNVNLP
RQRVKQMFREADTDDHQGTLGFEEFCAFYKMMSTRRDLYLLMLTYSNHKDHLDASDLQRFLEVEQKMNGV
TLESCQNIIEQFEPCLENKSKGMLGIDGFTNYTRSPAGDIFNPEHNRVHQDMTQPLSHYFITSSHNTYLV
GDQLMSQSRVDMYAWVLQAGCRCVEVDCWDGPDGEPIVHHGYTLTSKILFKDVIETINKYAFIKNEYPVI
LSIENHCSVVQQKKMAQYLTDILGDKLDLSSVSSEDATMLPSPQMLKGKILVKGKKLPANISEDAEEGEV
SDEDSADEMEDDCKLLNGDASTNRKRVENIAKKKLDSLIKESKIRDCEDPNDFSVSTLSPSGKLGRKAEA
KKGQSKVEEDVEAGEDSGVSRQNSRLFMSSFSKRKKKGSKIKKVASVEEGDETLDSPGSQSRGTARQKKT
MKLSRALSDLVKYTKSVGTHDVEIEVVSSWQVSSFSETKAHQILQQKPTQYLRFNQHQLSRIYPSSYRVD
SSNYNPQPFWNAGCQMVALNYQSEGRMLQLNRAKFSANGDCGYVLKPQCMCQGVFNPNSEDPLPGQLKKQ
LALRIISGQQLPKPRDSVLGDRGEIIDPFVEVEVIGLPVDCSKEQTRVVDDNGFNPMWEETLVFTVHMPE
IALVRFLVWDHDPIGRDFIGQRTLAFSSIMPGYRHVYLEGMEEASIFVHVAVSDISGKVKQTLGLKGLFL
RGTKPGSLDSHAAGQPLPRPSVSQRLLRRTASAPTKSQKPSRKGFPELALGTQDAGSEGAADDVAPSSPN
PALEAPTQERSGSSSPRDTRLFPLQRPISPLCSLEPIAEEPALGPGLPLQAAAPTGPSQEGSQCPVGLGA
KVTSSQQTSLGAFGTLQLRIGGGRENEEPPLRPHNGGISSGPREGTSGRQTDSKSRSRVPGHLPVVRRAK
SEGQVLSELSPTPAVYSDATGTDRLWQRLEPGSHRDSVSSSSSMSSNDTVIDLSLPSLGLCRSRESIPGV
SLGRLTSRPCLASAARPDLPPVTKSKSNPNLRVAGGLPTAPDELQPRPLAPRLTGHHPRPPWHHLTLVGL
RDCPVSAKSKSLGDLTADDFAPSFQGSTSSLSCGLGSLGVAHQVLEPGIRRDALTEQLRWLTGFQQAGDI
TSPTSLGPAGDGSVGGPSFLRRSSSRSQSRVRAIASRARQAQERQQRLRGQDSRGPPEEERGTPEGACSV
GHEGCVDVPMPAKGAPEQVCGAADGQLLLRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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