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Report for CCDS71527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71527.1 Public Mus musculus 4 Tnfrsf25 23 108 98 CCDS HistoryNCBI Gene:85030Re-query CCDS DB by CCDS ID:71527.1Re-query CCDS DB by GeneID:85030See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025706.9 ENSMUSP00000025706.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025706.9Link to Ensembl Protein Viewer:ENSMUSP00000025706.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000025706Re-query CCDS DB by Protein ID:ENSMUSP00000025706
Original member NCBI NM_001291010.1 NP_001277939.1 Updated not alive Link to Nucleotide Sequence:NM_001291010.1Link to Protein Sequence:NP_001277939.1Re-query CCDS DB by Nucleotide ID:NM_001291010Re-query CCDS DB by Protein ID:NP_001277939
Current member NCBI NM_001291010.2 NP_001277939.1 Accepted alive Link to Nucleotide Sequence:NM_001291010.2Link to Protein Sequence:NP_001277939.1Re-query CCDS DB by Nucleotide ID:NM_001291010Re-query CCDS DB by Protein ID:NP_001277939Link to BLAST:NP_001277939.1

Chromosomal Locations for CCDS 71527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 152116079 152116114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152116585 152116723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152116931 152117065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152117378 152117542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152117640 152117694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152118247 152118302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152118401 152118499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152118690 152118727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152119160 152119343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 152119511 152119839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGAGGCACGGCTGCTGCGGGGCTGCGTGGTGGAGCCTCTGTTCCTACCACTGCTGCTGCTGCTGCTGC
TGCTGCTTGGTGGCCAGGGCCAGGGCGGCATGTCTGGCAGGTGTGACTGTGCCAGTGAGTCCCAGAAGAG
GTATGGCCCGTTTTGTTGCAGGGGCTGCCCAAAGGGACACTACATGAAGGCCCCCTGCGCAGAACCCTGT
GGCAACTCCACCTGCCTTCCCTGTCCCTCGGACACCTTCTTGACCAGAGACAACCACTTTAAGACTGACT
GTACCCGCTGCCAAGTCTGTGATGAAGAGGCCCTTCAAGTGACCCTTGAGAACTGCTCGGCAAAGTCGGA
CACCCACTGTGGCTGCCAGTCAGGCTGGTGTGTTGACTGCTCCACCGAGCCATGTGGGAAAAGCTCACCT
TTCTCTTGTGTCCCATGCGGGGCTACAACACCAGTCCATGAGGCTCCAACCCCCCGGCCCTGCCTGCCTG
GCTTCTATATACGTGGCAATGACTGCACGTCCTGCCCCACGGGCTTCAGCAGCGTTTGCCCTAAGGCTTG
CACTGCTGTCTGTGGCTGGAAGCAGATGTTTTGGGTCCAGGTGCTTCTAGGAGTCGCGTTCCTTTTTGGG
GCTATCCTGATCTGTGCATATTGTCGATGGCAGCCTTGTAAGGCCGTGGTCACTGCAGACACAGCTGGGA
CGGAGACCCTGGCCTCACCACAGACTGCCCATCTCTCAGCCTCAGACAGCGCCCACACCCTCCTGGCACC
TCCAAGCAGTACTGGGAAAATCTGTACCACTGTCCAGTTGGTAGGCAACAACTGGACCCCTGGCTTATCC
CAGACTCAGGAGGTGGTCTGCGGACAGGCCTCACAACCCTGGGATCAGCTGCCAAACAGAACTCTTGGAA
CTCCTCTGGCATCTCCGCTCTCGCCAGCGCCCCCTGCGGGCTCTCCGGCTGCTGTGCTCCAGCCTGGCCC
GCAGCTCTACGATGTGATGGATGCGGTCCCAGCACGAAGGTGGAAGGAGTTCGTGCGCACGCTGGGGCTG
CGGGAAGCGGAAATTGAAGCCGTGGAGGTGGAAATCTGCCGCTTCCGAGACCAGCAGTATGAGATGCTCA
AGCGCTGGCGTCAGCAGCAGCCTGCAGGCCTCGGTGCCATCTATGCGGCTCTGGAGCGCATGGGTCTGGA
AGGCTGTGCCGAGGACCTGCGCAGCCGCCTGCAGCGTGGCCCGTGA

Translation (411 aa):
MEARLLRGCVVEPLFLPLLLLLLLLLGGQGQGGMSGRCDCASESQKRYGPFCCRGCPKGHYMKAPCAEPC
GNSTCLPCPSDTFLTRDNHFKTDCTRCQVCDEEALQVTLENCSAKSDTHCGCQSGWCVDCSTEPCGKSSP
FSCVPCGATTPVHEAPTPRPCLPGFYIRGNDCTSCPTGFSSVCPKACTAVCGWKQMFWVQVLLGVAFLFG
AILICAYCRWQPCKAVVTADTAGTETLASPQTAHLSASDSAHTLLAPPSSTGKICTTVQLVGNNWTPGLS
QTQEVVCGQASQPWDQLPNRTLGTPLASPLSPAPPAGSPAAVLQPGPQLYDVMDAVPARRWKEFVRTLGL
REAEIEAVEVEICRFRDQQYEMLKRWRQQQPAGLGAIYAALERMGLEGCAEDLRSRLQRGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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