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Report for CCDS7145.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7145.1 Public Homo sapiens 10 PRTFDC1 24 110 108 CCDS HistoryNCBI Gene:56952Re-query CCDS DB by CCDS ID:7145.1Re-query CCDS DB by GeneID:56952See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7145.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320152.11 ENSP00000318602.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320152.11Link to Ensembl Protein Viewer:ENSP00000318602.5Re-query CCDS DB by Nucleotide ID:ENST00000320152Re-query CCDS DB by Protein ID:ENSP00000318602
Original member Current member NCBI NM_020200.7 NP_064585.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020200.7Link to Protein Sequence:NP_064585.1Re-query CCDS DB by Nucleotide ID:NM_020200Re-query CCDS DB by Protein ID:NP_064585Link to BLAST:NP_064585.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064585.1 225 Q9NRG1-1 225 100% 0 0

Chromosomal Locations for CCDS 7145.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 24849844 24849891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24851388 24851464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24855318 24855364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24856913 24856995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24858392 24858409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24871998 24872063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24937184 24937367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24942330 24942436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 24952528 24952575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCCGGGAGCAGCGAGGAGGCGCCAGACTACGGGCGAGGCGTCGTGATTATGGATGATTGGCCAGGGT
ATGACTTGAATTTATTCACGTACCCACAGCACTATTATGGAGACTTGGAGTATGTCCTCATCCCTCATGG
TATCATTGTGGACAGAATTGAGCGGCTGGCCAAGGATATTATGAAAGACATAGGATATAGTGACATCATG
GTCCTGTGTGTGCTTAAAGGAGGTTACAAATTCTGTGCTGATCTCGTAGAACACCTTAAGAACATCAGCC
GAAATTCAGATCGATTTGTCTCAATGAAGGTTGATTTCATCAGACTAAAAAGTTACAGGAATGACCAGTC
CATGGGTGAGATGCAGATAATCGGAGGCGATGATCTTTCAACGCTGGCTGGAAAGAATGTTCTCATTGTT
GAGGATGTTGTCGGAACTGGGAGGACCATGAAAGCACTACTCAGCAATATAGAGAAATACAAGCCCAACA
TGATTAAGGTAGCCAGTTTGTTGGTGAAGAGAACATCCAGAAGTGACGGCTTTAGACCTGACTATGCTGG
ATTTGAGATTCCAAACTTATTTGTGGTGGGATATGCCTTAGATTACAATGAATACTTCAGAGATCTGAAT
CACATATGCGTCATCAATGAGCACGGTAAAGAAAAATATCGAGTCTAA

Translation (225 aa):
MAGSSEEAPDYGRGVVIMDDWPGYDLNLFTYPQHYYGDLEYVLIPHGIIVDRIERLAKDIMKDIGYSDIM
VLCVLKGGYKFCADLVEHLKNISRNSDRFVSMKVDFIRLKSYRNDQSMGEMQIIGGDDLSTLAGKNVLIV
EDVVGTGRTMKALLSNIEKYKPNMIKVASLLVKRTSRSDGFRPDYAGFEIPNLFVVGYALDYNEYFRDLN
HICVINEHGKEKYRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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