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Report for CCDS71362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71362.1 Public Mus musculus 4 Sigmar1 23 108 98 CCDS HistoryNCBI Gene:18391Re-query CCDS DB by CCDS ID:71362.1Re-query CCDS DB by GeneID:18391See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71362.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071561.6 ENSMUSP00000071492.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071561.6Link to Ensembl Protein Viewer:ENSMUSP00000071492.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071561Re-query CCDS DB by Protein ID:ENSMUSP00000071492
Original member Current member NCBI NM_001286539.1 NP_001273468.1 Accepted alive Link to Nucleotide Sequence:NM_001286539.1Link to Protein Sequence:NP_001273468.1Re-query CCDS DB by Nucleotide ID:NM_001286539Re-query CCDS DB by Protein ID:NP_001273468Link to BLAST:NP_001273468.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273468.1 192 O55242-2 192 100% 0 0

Chromosomal Locations for CCDS 71362.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41739354 41739580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41740776 41740976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41741102 41741252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (579 nt):
ATGCCGTGGGCCGCGGGACGGCGGTGGGCATGGATCACCCTGATTCTGACTATTATCGCAGTGCTGATCC
AGGCCGCCTGGTTGTGGCTGGGCACTCAAAACTTCGTCTTCTCTAGAGAAGAAATAGCGCAGCTTGCTCG
ACAGTATGCGGGGCTGGACCATGAGCTTGCCTTCTCTCGGCTGATCGTGGAGCTGCGGAGGCTGCACCCA
GGCCACGTGCTGCCGGATGAGGAGCTGCAGTGGGTATTTGTGAACGCGGGCGGCTGGATGGGCGCCATGT
GTATTCTGCACGCCTCGCTGTCTGAGTACGTGCTGCTCTTCGGCACCGCCCTGGGCTCCCATGGCCATTC
GGGAGAGACAGTTGTACACGGGCCTGGAGAAGCAACGGCTCTGGAGTGGGGACCAAACACGTGGATGGTG
GAGTACGGCCGGGGTGTTATTCCGTCTACCCTGTTCTTTGCACTAGCCGACACTTTCTTCAGCACCCAGG
ACTACCTCACACTCTTCTATACCCTTCGGGCCTATGCCCGGGGCCTCCGGCTTGAGCTTACCACCTACCT
CTTTGGCCAAGACTCCTGA

Translation (192 aa):
MPWAAGRRWAWITLILTIIAVLIQAAWLWLGTQNFVFSREEIAQLARQYAGLDHELAFSRLIVELRRLHP
GHVLPDEELQWVFVNAGGWMGAMCILHASLSEYVLLFGTALGSHGHSGETVVHGPGEATALEWGPNTWMV
EYGRGVIPSTLFFALADTFFSTQDYLTLFYTLRAYARGLRLELTTYLFGQDS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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