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Report for CCDS71345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71345.1 Under review, update Mus musculus 4 Pdp1 23 108 98 CCDS HistoryNCBI Gene:381511Re-query CCDS DB by CCDS ID:71345.1Re-query CCDS DB by GeneID:381511See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 71345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108302.7 ENSMUSP00000103937.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108302.7Link to Ensembl Protein Viewer:ENSMUSP00000103937.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108302Re-query CCDS DB by Protein ID:ENSMUSP00000103937
Original member NCBI NM_001290387.1 NP_001277316.1 Updated not alive Link to Nucleotide Sequence:NM_001290387.1Link to Protein Sequence:NP_001277316.1Re-query CCDS DB by Nucleotide ID:NM_001290387Re-query CCDS DB by Protein ID:NP_001277316
Current member NCBI NM_001290387.2 NP_001277316.2 Pending alive Link to Nucleotide Sequence:NM_001290387.2Link to Protein Sequence:NP_001277316.2Re-query CCDS DB by Nucleotide ID:NM_001290387Re-query CCDS DB by Protein ID:NP_001277316Link to BLAST:NP_001277316.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277316.2 538 Q3UV70 538 100% 0 0

Chromosomal Locations for CCDS 71345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 11960573 11962233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 11965884 11965959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGAGCGGCGGCGGTGCGCCTGTCCGGGCTCCTGGAGTTGCCCGCCGGGGGCTGTGATGCCGCCTCGCC
TGCCGGGAATCCCAGTCAGAACGTCCAGTCTGCCACTGTTCTCTGATGCCATGCCAGCACCAACTCAACT
GTTTTTTCCTCTCGTCCGTAACTGTGAACTGAGCAGAATCTATGGCACTGCATGTTACTGCCACCACAAA
CATCTCTGCTGTTCACCACCATACATTCCTCAGAATCGTCTGAGGTACACACCCCATCCTGCATATGCTA
CCTTTTGTAGGCCACGGGAGAACTGGTGGCAGTATACTCAAGGAAGGAGATACGCTTCTACACCGCAGAA
ATTTTACCTCACACCTCCACAAGTCAACAGCATCCTTAAAGCTAATGAATACAGCTTCAAAGTACCAGAA
TTTGATGGCAAAAATGTCAGTTCCATTCTTGGATTTGACAGCAATCAGCTGCCTGCAAATGCACCCATAG
AGGACCGGAGAAGTGCAGCAACCTGCTTGCAGACCAGAGGGATGCTCTTGGGGGTTTTTGATGGTCATGC
AGGCTGTGCTTGTTCCCAGGCAGTCAGTGAAAGACTCTTCTATTATATTGCTGTTTCCTTGTTGCCCCAT
GAGACTTTGCTAGAGATTGAAAATGCAGTGGAGAGTGGTCGGGCACTGCTACCTATCCTTCAGTGGCACA
AGCACCCCAATGATTACTTCAGTAAGGAGGCGTCCAAATTGTATTTCAACAGCTTGAGGACTTACTGGCA
AGAACTCATAGACCTCAATACTGGAGAATCAGCTGATATTGATGTTAAGGAGGCTTTAATTAATGCTTTC
AAGAGACTCGATAATGACATTTCATTGGAGGCTCAAGTTGGTGATCCTAATTCTTTTCTAAATTACCTGG
TGCTTCGGGTAGCATTTTCTGGGGCTACTGCTTGTGTGGCCCATGTAGATGGTGTTGACCTCCATGTGGC
TAACACTGGTGATAGTAGAGCCATGCTAGGTGTGCAAGAAGAAGATGGCTCTTGGTCAGCAGTCACACTC
TCTAATGACCACAATGCTCAGAATGAAAGAGAACTAGAGCGTCTGAAACTGGAACACCCAAAAAATGAGG
CCAAGAGCGTGGTAAAGCAGGACCGGCTGCTTGGCTTGCTGATGCCCTTTAGGGCTTTTGGAGATGTAAA
GTTCAAATGGAGCATTGACCTTCAAAAGAGAGTGATAGAGTCTGGCCCAGACCAGTTGAATGACAATGAA
TACACCAAGTTTATCCCTCCTAACTATCATACACCTCCTTATCTTACTGCTGAGCCAGAGGTAACTTATC
ACAGATTAAGGCCACAGGATAAATTCCTAGTGTTAGCAACTGATGGGTTGTGGGAGACTATGCATAGACA
GGATGTGGTTAGGATTGTGGGTGAATACTTAACTGGTATGCATCACCAACAGCCAATAGCAGTTGGTGGG
TACAAGGTGACTCTGGGACAGATGCATGGCCTTTTAACAGAAAGGAGAGCAAAGATGTCATCAGTGTTTG
AGGATCAGAATGCAGCAACCCATCTCATTCGCCATGCTGTAGGCAATAATGAATTTGGGGCTGTTGATCA
TGAACGACTCTCTAAAATGCTTAGTCTTCCTGAAGAGCTTGCTCGGATGTATAGAGATGACATTACAATC
ATTGTAGTTCAGTTCAATTCTCATGTTGTAGGGGCATACCAAAACCAGGAACAGTAA

Translation (578 aa):
MERRRCACPGSWSCPPGAVMPPRLPGIPVRTSSLPLFSDAMPAPTQLFFPLVRNCELSRIYGTACYCHHK
HLCCSPPYIPQNRLRYTPHPAYATFCRPRENWWQYTQGRRYASTPQKFYLTPPQVNSILKANEYSFKVPE
FDGKNVSSILGFDSNQLPANAPIEDRRSAATCLQTRGMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPH
ETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNSLRTYWQELIDLNTGESADIDVKEALINAF
KRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGVDLHVANTGDSRAMLGVQEEDGSWSAVTL
SNDHNAQNERELERLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESGPDQLNDNE
YTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGG
YKVTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITI
IVVQFNSHVVGAYQNQEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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