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Report for CCDS71142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71142.1 Public Mus musculus 2 Sirpa 23 108 98 CCDS HistoryNCBI Gene:19261Re-query CCDS DB by CCDS ID:71142.1Re-query CCDS DB by GeneID:19261See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049262.13 ENSMUSP00000049022.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049262.13Link to Ensembl Protein Viewer:ENSMUSP00000049022.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000049262Re-query CCDS DB by Protein ID:ENSMUSP00000049022
Original member Current member EBI ENSMUST00000161620.7 ENSMUSP00000124048.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161620.7Link to Ensembl Protein Viewer:ENSMUSP00000124048.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161620Re-query CCDS DB by Protein ID:ENSMUSP00000124048
Original member NCBI NM_001291019.1 NP_001277948.1 Updated not alive Link to Nucleotide Sequence:NM_001291019.1Link to Protein Sequence:NP_001277948.1Re-query CCDS DB by Nucleotide ID:NM_001291019Re-query CCDS DB by Protein ID:NP_001277948
Current member NCBI NM_001291019.2 NP_001277948.1 Accepted alive Link to Nucleotide Sequence:NM_001291019.2Link to Protein Sequence:NP_001277948.1Re-query CCDS DB by Nucleotide ID:NM_001291019Re-query CCDS DB by Protein ID:NP_001277948Link to BLAST:NP_001277948.1
Original member NCBI NM_001291020.1 NP_001277949.1 Updated not alive Link to Nucleotide Sequence:NM_001291020.1Link to Protein Sequence:NP_001277949.1Re-query CCDS DB by Nucleotide ID:NM_001291020Re-query CCDS DB by Protein ID:NP_001277949
Current member NCBI NM_001291020.2 NP_001277949.1 Accepted alive Link to Nucleotide Sequence:NM_001291020.2Link to Protein Sequence:NP_001277949.1Re-query CCDS DB by Nucleotide ID:NM_001291020Re-query CCDS DB by Protein ID:NP_001277949Link to BLAST:NP_001277949.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277948.1 513 P97797-1 513 100% 0 0
NP_001277949.1 513 P97797-1 513 100% 0 0

Chromosomal Locations for CCDS 71142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 129593613 129593694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129608904 129609260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129615447 129615764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129616223 129616558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129618457 129618570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129621203 129621227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129627946 129627997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 129629927 129630184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGAGCCCGCCGGCCCGGCCCCTGGCCGCCTAGGGCCGCTGCTGCTCTGCCTGCTGCTCTCCGCGTCCT
GTTTCTGTACAGGAGCCACGGGGAAGGAACTGAAGGTGACTCAGCCTGAGAAATCAGTGTCTGTTGCTGC
TGGGGATTCGACCGTTCTGAACTGCACTTTGACCTCCTTGTTGCCGGTGGGACCCATTAGGTGGTACAGA
GGAGTAGGGCCAAGCCGGCTGTTGATCTACAGTTTCGCAGGAGAATACGTTCCTCGAATTAGAAATGTTT
CAGATACTACTAAGAGAAACAATATGGACTTTTCCATCCGTATCAGTAATGTCACCCCAGCAGATGCTGG
CATCTACTACTGTGTGAAGTTCCAGAAAGGATCATCAGAGCCTGACACAGAAATACAATCTGGAGGGGGA
ACAGAGGTCTATGTACTCGCCAAACCTTCTCCACCGGAGGTATCCGGCCCAGCAGACAGGGGCATACCTG
ACCAGAAAGTGAACTTCACCTGCAAGTCTCATGGCTTCTCTCCCCGGAATATCACCCTGAAGTGGTTCAA
AGATGGGCAAGAACTCCACCCCTTGGAGACCACCGTGAACCCTAGTGGAAAGAATGTCTCCTACAACATC
TCCAGCACAGTCAGGGTGGTACTAAACTCCATGGATGTTAATTCTAAGGTCATCTGCGAGGTAGCCCACA
TCACCTTGGATAGAAGCCCTCTTCGTGGGATTGCTAACCTGTCTAACTTCATCCGAGTTTCACCCACCGT
GAAGGTCACCCAACAGTCCCCGACGTCAATGAACCAGGTGAACCTCACCTGCCGGGCTGAGAGGTTCTAC
CCCGAGGATCTCCAGCTGATCTGGCTGGAGAATGGAAACGTATCACGGAATGACACGCCCAAGAATCTCA
CAAAGAACACGGATGGGACCTATAATTACACAAGCTTGTTCCTGGTGAACTCATCTGCTCATAGAGAGGA
CGTGGTGTTCACGTGCCAGGTGAAGCACGACCAACAGCCAGCGATCACCCGAAACCATACCGTGCTGGGA
TTTGCCCACTCGAGTGATCAAGGGAGCATGCAAACCTTCCCTGATAATAATGCTACCCACAACTGGAATG
TCTTCATCGGTGTGGGCGTGGCGTGTGCTTTGCTCGTAGTCCTGCTGATGGCTGCTCTCTACCTCCTCCG
GATCAAACAGAAGAAAGCCAAGGGGTCAACATCTTCCACACGGTTGCACGAGCCCGAGAAGAACGCCAGG
GAAATAACCCAGGTACAGTCTTTGATCCAGGACACAAATGACATCAACGACATCACATACGCAGACCTGA
ATCTGCCCAAAGAGAAGAAGCCCGCACCCCGGGCCCCTGAGCCTAACAACCACACAGAATATGCAAGCAT
TGAGACAGGCAAAGTGCCTAGGCCAGAGGATACCCTCACCTATGCTGACCTGGACATGGTCCACCTCAGC
CGGGCACAGCCAGCCCCCAAGCCTGAGCCATCTTTCTCAGAGTATGCTAGTGTCCAGGTCCAGAGGAAGT
GA

Translation (513 aa):
MEPAGPAPGRLGPLLLCLLLSASCFCTGATGKELKVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIRWYR
GVGPSRLLIYSFAGEYVPRIRNVSDTTKRNNMDFSIRISNVTPADAGIYYCVKFQKGSSEPDTEIQSGGG
TEVYVLAKPSPPEVSGPADRGIPDQKVNFTCKSHGFSPRNITLKWFKDGQELHPLETTVNPSGKNVSYNI
SSTVRVVLNSMDVNSKVICEVAHITLDRSPLRGIANLSNFIRVSPTVKVTQQSPTSMNQVNLTCRAERFY
PEDLQLIWLENGNVSRNDTPKNLTKNTDGTYNYTSLFLVNSSAHREDVVFTCQVKHDQQPAITRNHTVLG
FAHSSDQGSMQTFPDNNATHNWNVFIGVGVACALLVVLLMAALYLLRIKQKKAKGSTSSTRLHEPEKNAR
EITQVQSLIQDTNDINDITYADLNLPKEKKPAPRAPEPNNHTEYASIETGKVPRPEDTLTYADLDMVHLS
RAQPAPKPEPSFSEYASVQVQRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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