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Report for CCDS71052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71052.1 Public Mus musculus 2 Cacnb4 23 108 98 CCDS HistoryNCBI Gene:12298Re-query CCDS DB by CCDS ID:71052.1Re-query CCDS DB by GeneID:12298See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71052.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102761.8 ENSMUSP00000099822.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102761.8Link to Ensembl Protein Viewer:ENSMUSP00000099822.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000102761Re-query CCDS DB by Protein ID:ENSMUSP00000099822
Original member NCBI NM_001285427.1 NP_001272356.1 Updated not alive Link to Nucleotide Sequence:NM_001285427.1Link to Protein Sequence:NP_001272356.1Re-query CCDS DB by Nucleotide ID:NM_001285427Re-query CCDS DB by Protein ID:NP_001272356
Current member NCBI NM_001285427.2 NP_001272356.1 Accepted alive Link to Nucleotide Sequence:NM_001285427.2Link to Protein Sequence:NP_001272356.1Re-query CCDS DB by Nucleotide ID:NM_001285427Re-query CCDS DB by Protein ID:NP_001272356Link to BLAST:NP_001272356.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001272356.1 473 Q8R0S4-2 473 100% 0 0

Chromosomal Locations for CCDS 71052.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 52434489 52434749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52436886 52437071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52449950 52450045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52451869 52452020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52455600 52455709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52464610 52464668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52465598 52465678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52465894 52465913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52467244 52467320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52469477 52469607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52474863 52474985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52477692 52477811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 52556202 52556207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1422 nt):
ATGGCTGGGTCAGCAGATTCCTATACAAGCAGGCCATCGGACTCCGATGTCTCCTTGGAAGAGGACCGGG
AAGCGATCCGGCAAGAGCGAGAACAGCAAGCAGCTATCCAGCTTGAGAGAGCGAAGTCCAAACCTGTAGC
TTTTGCGGTGAAAACGAACGTGAGCTACTGTGGTGCCCTGGACGAAGATGTGCCCGTTCCCAGCACAGCC
ATCTCCTTTGACGCCAAGGACTTTCTTCACATTAAAGAGAAATATAACAATGATTGGTGGATAGGAAGAC
TGGTAAAAGAGGGCTGTGAGATTGGCTTCATCCCAAGTCCACTGCGCTTGGAGAATATTCGGATTCAACA
GGAACAGAAAAGAGGCCGTTTTCATGGCGGGAAATCGAGTGGAAACTCTTCCTCCAGTCTGGGAGAAATG
GTATCAGGAACATTCCGAGCAACTCCCACAACAACAGCAAAACAGAAGCAGAAAGTGACGGAGCACATTC
CTCCGTATGACGTCGTGCCGTCAATGCGTCCTGTGGTGTTAGTGGGGCCATCACTGAAAGGTTATGAGGT
AACAGACATGATGCAGAAAGCCCTCTTTGATTTCCTGAAGCACAGGTTTGATGGGAGGATATCAATAACA
AGAGTGACAGCTGACATTTCTCTTGCTAAGAGATCTGTCCTCAACAATCCTAGCAAGAGAGCAATAATTG
AACGTTCCAACACCAGATCCAGCTTAGCGGAAGTACAAAGTGAAATTGAAAGAATTTTTGAGTTGGCAAG
ATCTTTGCAATTGGTTGTTCTTGATGCAGACACCATCAACCACCCAGCACAGCTGATAAAGACATCCTTA
GCACCCATCATCGTCCACGTGAAGGTCTCGTCCCCAAAGGTTTTACAGCGGCTGATTAAGTCCAGAGGAA
AGTCCCAAAGCAAACACTTGAATGTTCAACTGGTGGCGGCCGATAAACTGGCCCAGTGCCCGCCTGAAAT
GTTTGATGTTATATTAGATGAGAATCAACTTGAGGATGCCTGTGAACATCTGGGAGAGTACCTGGAGGCA
TACTGGCGTGCCACCCACACGAGCAGTAGCACCCCTATGACCCCATTACTGGGGCGGAACGTGGGCTCCA
CAGCCCTCTCACCATATCCCACAGCAATCTCTGGATTACAGAGTCAGCGAATGAGACACAGCAACCATTC
TACAGAGAATTCTCCAATTGAAAGACGAAGCCTAATGACCTCGGATGAAAATTACCACAATGAGAGGGCC
CGCAAGAGTAGGAACCGCTTGTCTTCCAGCTCCCAGCACAGCCGAGACCACTACCCTCTGGTGGAAGAAG
ATTACCCGGACTCGTACCAGGACACTTATAAGCCCCATAGGAACCGAGGATCGCCCGGGGGGTGCAGCCA
TGACTCCCGACATAGGCTTTGA

Translation (473 aa):
MAGSADSYTSRPSDSDVSLEEDREAIRQEREQQAAIQLERAKSKPVAFAVKTNVSYCGALDEDVPVPSTA
ISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRGRFHGGKSSGNSSSSLGEM
VSGTFRATPTTTAKQKQKVTEHIPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFDGRISIT
RVTADISLAKRSVLNNPSKRAIIERSNTRSSLAEVQSEIERIFELARSLQLVVLDADTINHPAQLIKTSL
APIIVHVKVSSPKVLQRLIKSRGKSQSKHLNVQLVAADKLAQCPPEMFDVILDENQLEDACEHLGEYLEA
YWRATHTSSSTPMTPLLGRNVGSTALSPYPTAISGLQSQRMRHSNHSTENSPIERRSLMTSDENYHNERA
RKSRNRLSSSSQHSRDHYPLVEEDYPDSYQDTYKPHRNRGSPGGCSHDSRHRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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