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Report for CCDS70779.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70779.1 Public Mus musculus 17 Slc26a8 23 108 98 CCDS HistoryNCBI Gene:224661Re-query CCDS DB by CCDS ID:70779.1Re-query CCDS DB by GeneID:224661See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 70779.1
The exon combination of this CCDS representation is inferred due to a lack of full-length transcript support for this gene. It is supported by partial mouse transcript alignments, RNA-seq data and orthologous alignments.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 70779.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114764.7 ENSMUSP00000110412.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114764.7Link to Ensembl Protein Viewer:ENSMUSP00000110412.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114764Re-query CCDS DB by Protein ID:ENSMUSP00000110412
Original member NCBI NM_001290320.1 NP_001277249.1 Updated not alive Link to Nucleotide Sequence:NM_001290320.1Link to Protein Sequence:NP_001277249.1Re-query CCDS DB by Nucleotide ID:NM_001290320Re-query CCDS DB by Protein ID:NP_001277249
Current member NCBI NM_001290320.2 NP_001277249.1 Accepted alive Link to Nucleotide Sequence:NM_001290320.2Link to Protein Sequence:NP_001277249.1Re-query CCDS DB by Nucleotide ID:NM_001290320Re-query CCDS DB by Protein ID:NP_001277249Link to BLAST:NP_001277249.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277249.1 999 Q8R0C3-1 999 100% 0 0

Chromosomal Locations for CCDS 70779.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28638168 28638692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28642234 28642418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28642516 28642570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28644549 28644926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28647897 28648028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28648121 28648213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28649282 28649351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28649431 28649537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28650166 28650261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28652448 28652525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28653832 28653945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28654845 28654992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28659593 28659675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28661865 28662014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28663564 28663728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28669903 28670084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28672735 28672851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28676064 28676203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28684707 28684888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3000 nt):
ATGCAAACAGAGAGGAGCCTCCAGAGTTTCAGCAACAGATACACACAAATCCCTTTTGTGTACGATGTTA
AGCGGAGCGTGTACAACGAGGAGAATTTCCAGCAGGAGCACAGGAAGAAGGGCCCCACCTCTGGGAACGT
GGACATCGATATCACCACTTTCAAGCACCACGTCCAGTGCGGCTGCTCCTGGCACAAGTTCCTGAGATGC
ATGCTCACAGTCTTCCCCTTCCTGGAGTGGATATGTTTGTATCGATTCAAGGACTGGCTTCTTGGAGACT
TACTTGCTGGTTTAAGTGTTGGTCTTGTTCAAGTTCCCCAAGGCCTGATACTTAGTTTACTGACAAGGCA
GCTGATTCCTCCCCTCAACGTCACTTACGCCGCCTTCTGCTCTTCAGTCATTTATGTCATTTTTGGATCA
TGTCATCAAATGTCCATCGGCCCCTTCTTCCTTGTGAGTGCTCTGATGATCAATGTCCTGAAGGATAGAC
CCTTCAACAATGGTCACCTGATCTTGGGAACTTTTGTCAAAGATGACTTCTCTGTCCCCACATTCTACTT
GAGCTACAACAGATCCTTAAGTATGGTGGCATCTACAACTTTCCTGACTGGGATTATTCAGCTGTCAATG
GGTATGTTGGGCATGGGCTTCATGGCCACATATCTTCCAGAGGCTGCAACCAGCGCTTATCTAGCAGCTG
TGGCCCTGCACATCATACTGGCCCAGATGACATGCATCTTGGGGATTATGGTCAGTTTCCATGCTGGGCC
CATCTCCTTCATCTACAACATAATTAACTACTGCATAGCTCTCCCCAAAGCGAACTCTACCAGCATCCTG
CTGTTCATCACCTCTGTGGTGGCTCTGAGAATCAACAAGTGCATCCGCATTACCTTCAACCGCTACCCTA
TCGAGTTCCCCATGGAGCTGCTGCTGATTCTTGGCTTCAGCTTACTTACAAGCAAGATAACCATGGCCAC
AGAAAACAGCAAGATGCTGATGAACATGATTCCATACAGCTTCGTGTTCCCTGAGAATCCAGAGTTCGGC
ATTCTTAGCAGAGTTGTTTTACAAGCCTTGTCTTTATCTTTTGTGAGCTCCTTTCTGCTTATATCTCTGG
GCAAGAAGATTGCCAACTTCCATAACTACAGAACCAATTCCAACCAGGATTTAATAGCCATCGGTCTTTG
CAACTTGCTCAGCTCCTTTTTCAAATGCTGTGTGTTCACCGGTAGTTTGTCCAGGACGACTATCCAGGAC
AAATCTGGAGGAAGACAGCAGTTTGCCTCTCTGGTAGGCGCAGGTGTGATGCTGCTGCTGATGGTGAAGA
TGGAAAGCTTCTTCCACAATCTGCCTAACGCTGTGCTGGCTGGGATCATCTTAAGCAATGTGGTGCCCTA
CCTTGAAGCCATTTACAACTTACCCAGTTTGTGGAGGCAGGACCAGTACGAATGTATCATTTGGATGGTG
ACATTCTCCTCTGCGATTCTCCTGGGACTCGACGTTGGACTGCTCATCTCACTGGCCTTCACTTTCTTTG
TCATCACTATTCGCTCGCACAGAACCAAGATCCTCGTCTTGGGTCAGATCCCCAATACCAACATTTACAG
AAATGTTAATGACTACCGGGAGGTGATTCTCATCCCTGGGGTGAAAATCTTTCAGTGTTGCAGCTCCATC
ACGTTTGTTAACGTGTACCATCTAAAGCAAAAGGTGTTAAAAGAGGTCAATATGGTGAAGTTGCCCCTTA
AAGAAGAAGAAATTTATACTCTGTTTCATGAAAGTGAGACCAGTATAGCAGAAAACAAACTTTGTAGGTG
TTTCTGTGACTGTGAAGAACTGGAGCCAGAGATCAGGGTTGTCTACACAGAGCGATATGAAAACAGACAG
GAGCAGGACTCATCCATCAACCTGATCCGCTGCTCCTACCTGGGCAGCGGGGACAGCAGCCAAGTCACTT
CTGAGGAACAGATTCCCTACACAGTGTCTTCCACATCACAGAGAAATATAGTGCAGAGCTACGAGGACAC
AGAGAAAGCCTGGCTACCCAACAGCCCCCCAAGAAACAGTCCACTGCCACCGCCCGAGGCCTCAGAAAGC
TTAGCACAGAGCCGATCCAGATCCATTATCATGCCTTACTCGGATACGAGTGTGCAGAACAACACCCATA
CCATCATTCTGGACTTTTCCATGGTGCACTATGTGGATAATCGGGCTTTGGTTATACTAAGGCAGATGTG
CAATGCTTTCTACAATGCCAACATTTTGGTCCTCATTTCAGGGTGTCACACCTCTGTGGTCAAGTCGTTT
GAGAAGAATGATTTCTTTGATGAAGGCATCACGAAGGCCCAGCTCTTCCTCAGCCTCCATGACGCCGTGC
TGTTTGCCTTGTCCAGGAAGTTCTCTGAGCCTTCAGACTTAAGTATGGATGAGACCGAGACAGTGATACA
GGAAACCTACTCAGAGTCAGACAAGAATGGCAATCTGAGCAACCTAAGACTCAAAACGGGGAAGGCCATC
ATAGAAGGCTCCCAGCATGCAAGTCCAGGCTTCACCAAGAACCTGAAGCCTGGTAAGGATGACTTGGAGT
TTGACCTGGAACTGGATCCCATGCTGTCTTTTGAACAGAGCAGTGGGATGGACCTCAATCTGGACCTAGA
CTTGGACTTGGACCAGTCAGAGCTGGACCCTGGATCTGAGCTGGATTCTGAGATCCAAGCCAAACCTGAG
CTGGAACTAGAGTCGGAGCTTGAGACAGATGCCCAGACAGAGCCAGAGACAGAGGAAGAGCCAGAGCTGG
AGCCAGAGCCAGAGCCAGAGCCAGAGACAGAGCCAGAGCCAGAGCCAGAGAGAGAGAGGAAGACCAGGAC
AAGGTCTCAGAGCCCCTGGCGGAACTACTTCACTGCTTATCGCTTTGGTTCTTCAAACTCCCAGTCTAGA
GCTCCACCTCAGACACGCCCAGAAAAGAGAAAGCCACATAATTACCCCAATTCTCCCTAA

Translation (999 aa):
MQTERSLQSFSNRYTQIPFVYDVKRSVYNEENFQQEHRKKGPTSGNVDIDITTFKHHVQCGCSWHKFLRC
MLTVFPFLEWICLYRFKDWLLGDLLAGLSVGLVQVPQGLILSLLTRQLIPPLNVTYAAFCSSVIYVIFGS
CHQMSIGPFFLVSALMINVLKDRPFNNGHLILGTFVKDDFSVPTFYLSYNRSLSMVASTTFLTGIIQLSM
GMLGMGFMATYLPEAATSAYLAAVALHIILAQMTCILGIMVSFHAGPISFIYNIINYCIALPKANSTSIL
LFITSVVALRINKCIRITFNRYPIEFPMELLLILGFSLLTSKITMATENSKMLMNMIPYSFVFPENPEFG
ILSRVVLQALSLSFVSSFLLISLGKKIANFHNYRTNSNQDLIAIGLCNLLSSFFKCCVFTGSLSRTTIQD
KSGGRQQFASLVGAGVMLLLMVKMESFFHNLPNAVLAGIILSNVVPYLEAIYNLPSLWRQDQYECIIWMV
TFSSAILLGLDVGLLISLAFTFFVITIRSHRTKILVLGQIPNTNIYRNVNDYREVILIPGVKIFQCCSSI
TFVNVYHLKQKVLKEVNMVKLPLKEEEIYTLFHESETSIAENKLCRCFCDCEELEPEIRVVYTERYENRQ
EQDSSINLIRCSYLGSGDSSQVTSEEQIPYTVSSTSQRNIVQSYEDTEKAWLPNSPPRNSPLPPPEASES
LAQSRSRSIIMPYSDTSVQNNTHTIILDFSMVHYVDNRALVILRQMCNAFYNANILVLISGCHTSVVKSF
EKNDFFDEGITKAQLFLSLHDAVLFALSRKFSEPSDLSMDETETVIQETYSESDKNGNLSNLRLKTGKAI
IEGSQHASPGFTKNLKPGKDDLEFDLELDPMLSFEQSSGMDLNLDLDLDLDQSELDPGSELDSEIQAKPE
LELESELETDAQTEPETEEEPELEPEPEPEPETEPEPEPERERKTRTRSQSPWRNYFTAYRFGSSNSQSR
APPQTRPEKRKPHNYPNSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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