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Report for CCDS70705.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70705.1 Public Mus musculus 16 Atp13a5 23 108 98 CCDS HistoryNCBI Gene:268878Re-query CCDS DB by CCDS ID:70705.1Re-query CCDS DB by GeneID:268878See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70705.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000143373.7 ENSMUSP00000121208.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000143373.7Link to Ensembl Protein Viewer:ENSMUSP00000121208.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000143373Re-query CCDS DB by Protein ID:ENSMUSP00000121208
Original member Current member NCBI NM_001284375.1 NP_001271304.1 Accepted alive Link to Nucleotide Sequence:NM_001284375.1Link to Protein Sequence:NP_001271304.1Re-query CCDS DB by Nucleotide ID:NM_001284375Re-query CCDS DB by Protein ID:NP_001271304Link to BLAST:NP_001271304.1

Chromosomal Locations for CCDS 70705.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 29232603 29232863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29234559 29234639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29237233 29237321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29248134 29248336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29251251 29251425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29260917 29260989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29263446 29263542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29266944 29267053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29275404 29275446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29277650 29277729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29279097 29279213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29280930 29281090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29281944 29282068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29293421 29293538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29297379 29297535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29298168 29298254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29308204 29308354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29310733 29310794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29314506 29314694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29316636 29316793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29321623 29321793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29327667 29327795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29328667 29328739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29339025 29339094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29348490 29348570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29348676 29348746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29348956 29349102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29350636 29350809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 29378475 29378537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3516 nt):
ATGGAGAAGAGCAAGAAGGATGGCCACCAGGCTGTGCTCAATGAAGGGGAGGAGAATGAGCTGGAGGTGT
TTGGCTACCATACCCAGAATTTACGGAGAGCACTGTGCCTTGTCACAGCCATCCTGACTCTTGGGGCAGT
TCAGCTGATGTTCTACTGGAGGCCTGAGTGGTGGGTGTGGACCAGTTGCATCCCATGCCCCTTGCAAGAA
GCAGACACAATTTTGCTGAGGACAACCGATGAATTTCGAAGATATATGAGGAAAAAGGTCTTCTGCCTCC
ACTTATCCACACTGAAGTTTCCTATAAGCAAGAACCCAGAGGAACCTCTGGTAGCTGACCACCACTCAGT
CATAAACCAAGCTGTGATGAAGCCAGAACTAAAACTACGATGCATCCAAGTGCAGAAAATAAGGTACGTG
TGGGATTTCTTGAAGAAGCGATTTCAGAAAGTTGGGTTGCTGGAAGACAGTAACTCCTGCTTTGACATCC
ACCATACGTTTGGATTGGGTCTGACCAATGAAGAGCAAGAGGTCAGAAGGTTAGTGTGTGGGCCCAACTC
GATCGAGGTGGAGATCCAACCCATATGGAAGCTGCTTGTTAAACAGCAATCAGTTAAGCTACACAAGCTT
GTGGAGGAGCACAACAAAGTCCAGGTCACGATCACAGTAAGAGACAAAGGTCTACAGGAGCTGGAGTCCC
GTCTCCTGGTTCCAGGAGATATTCTCATTCTTCCAGGGAAAATTTCACTGCCCTGTGATGCTATCTTGAT
CGATGGGAGTTGTGTGGTGAATGAAGGAATGCTCACAGGAGAAAGTATACCTGTTACAAAGACACCATTG
CCCCAAACGGAGAACACCATGCCCTGGAAATCGCACAGTTTGGAGGACTACCGGAAACACGTGCTCTTCT
GTGGAACAGAAGTTATTCAGGTCAAGCCATCTGCTCAGGGGCTTGTTAGAGCTGTTGTTCTGCAGACAGG
TTATAATACAGCCAAAGGAGACTTAGTGAGATCCATCCTCTACCCTCGACCTCTGAACTTCAAACTGTAT
AATGATGCCTTCAAGTTCATGGTGTTCCTGGCCTGCGTTGGTGTTGTGGGATTTTTCTATGCCCTAGGTG
TCTATATGTACCATGAAGTACCTCCGAGAGAAACTGCAACCATGGCCCTGATCCTTCTCAGTGCCACCGT
CCCTCCCGTGCTCCCGGCTGCACTGACCATAGGCAACGTGTACGCCCAGAAGAGGTTGAAGAAGGAGAAG
ATTTTCTGTATCTCCCCGCAGAGAATCAACATGTGTGGTCAGATCAACCTCGTGTGCTTCGACAAAACAG
GAACTCTGACAGAAGATGGGCTGGACCTCTGGGGGACTGTCCCCACCGCTGGCAACTGTTTCCAGGCAGT
CCACAGCTTTGCCTCAGGTGAGGCTGTGCCCTGGGGCCCACTGTGTGCAGCCATGACTAGCTGCCATTCT
CTGATCCTTCTTGATGGGACCATCCAAGGAGACCCTTTGGACCTCAAAATGTTTGAAGGCACTGGTTGGA
ATATGGAAGATAGCCAAGTGGCCTCCTGCAAATTTGGCATGGCAGATTCAAGCACAGTAATAAAACCAGG
ACCGAAAGCCAGCCAGAGTCCTGTGGACAGCATCACCATCTTGCGCCAGTTTCCATTTTCCTCAGGCCTG
CAAAGGATGTCTGTGATTGCTCAGCTGGCTGGTGACCTTCACCTCCACGTCTACATGAAGGGAGCCCCAG
AAATGGTGGCCAGGTTCTGCCGCTCTGAAACGGTGCCTAAGAACTTCTCGCAGGAGCTGAGGAATTACAC
AGTGCAAGGCTTCCGAGTCATTGCTCTTGCCCACAAAACCCTAAAGATGGAGAGGCTTTCAGATATGGAC
CATCTAGCAAGGGAGAAAGTGGAGTCTGAGTTGGCCTTTCTGGGACTTCTCATAATGGAGAATCGCTTGA
AAAAGGAAACAAGGCCAGTGCTGAAGGAGCTGAGTGAGGCCCGCATCAGGACCGTGATGGTTACAGGTGA
CAATCTTCAAACTGCCATCACTGTTGCTAAAAATTCTGAAATGATTCCTGTGGGCAGCCAGGTCGTCATT
GTCGAGGCTAATGAGCCAGGAGACCTTGTTCCTGCTTCTGTGACCTGGCAGCTGGTGGGGACCCAAGAGC
CAGGCTCTGGGAAGAAGGACACCTACATTGACATCGGAAACAGCTCTGTACCTGCTGGGAAAGGTTACCA
TTTTGCAATGAGTGGGAAGTCATACCAAGTGTTATTTCATCATTTCTACAGCATGCTGCCACAAATTCTG
GTTAATGGAACCATTTTTGCAAGAATGTCTCCTGGGCAGAAGTCAAGCCTCGTGGAAGAGTTTCAGAAAT
TAAATTATTATGTGGGCATGTGTGGAGATGGAGCCAATGACTGTGGGGCTTTGAAAATGGCTCATGCTGG
CATCTCACTATCAGAACAGGAAGCATCCGTGGCATCTCCCTTCACCTCGAAAACAGCCAATATCGAGTGT
GTGCCTCATCTCATCAGGGAGGGCCGGGCTGCTCTGGTCTCATCCTTCGGTGTATTTAAATACCTGACTA
TGTACGGCATCATCCAGTTTATTGGAACATCACTTCTGTACTGGCAACTACAGCTCTTTGGTAACTACCA
GTACCTCCTGCAAGATGTGGCCATCACGCTGATGGTCAGCTTAACAATGAGCATAAACCATGCCTACCCG
AAGTTGGCTCCCTACAGACCAGCAGGACAACTACTTTCTCCTCAGTTGCTACTCTCAGTCTTCATGAATT
CCTGTTTTACCTGCATTGTGCAAGTGTGTACATTTCTCACCGTGAAACAGCAGCCTTGGTACTGCGAGGT
CTACAAATACAGTGAATGCTTTCTGGTCAACCAAAGTAACCTCTCAGCCAACGTGAGTTTGGACCGAAAC
TGGACTGGAAATGCAACTCTGGTTCCCGCTTCTGTGCTAAGTTTCGAGGGCACTACGTTGTGGCCCATCG
TCACCTTCAACTGCATCTCTGCAGCATTTATTTTTTCTAAGGGAAAGCCGTTTCGGAAACCCATCTACGC
AAACTATTTATTCTCCCTTCTGCTGGCATCTGCTGCGGGCCTCACTATTTTCATTCTGTTTTGTGATTTT
CAAGACCTGTACCGTAAAATGGAGTTCATCCCAACCCCCACATCATGGAGAGTTTCAATTCTGATAGCAG
CTTTTGTCCAGTTCTGCGTTGCCTTCTTTGTAGAGGATGCCGTCCTTCAAAACAGAGAGCTCTGGCTGTT
TATCAAGAAAGAATTTGGATTCTACTCCAAAAGTCAGTATAGGATCTTGCAGAGAAAGCTGGCAGAGGAC
TCTACATGGCCTCCCGTGAACAGGACAGATTATGCAGTCAATGGCAAAAATGGATTCTATGTCAACAGAG
CCTATGAGAGCCCCGAAGAGGTCCCCAAAGGGAAGCTCAAGCTGGAAGAGCAGGCTTCAGAACAGCACTT
TTGGACTAGACTGTAA

Translation (1171 aa):
MEKSKKDGHQAVLNEGEENELEVFGYHTQNLRRALCLVTAILTLGAVQLMFYWRPEWWVWTSCIPCPLQE
ADTILLRTTDEFRRYMRKKVFCLHLSTLKFPISKNPEEPLVADHHSVINQAVMKPELKLRCIQVQKIRYV
WDFLKKRFQKVGLLEDSNSCFDIHHTFGLGLTNEEQEVRRLVCGPNSIEVEIQPIWKLLVKQQSVKLHKL
VEEHNKVQVTITVRDKGLQELESRLLVPGDILILPGKISLPCDAILIDGSCVVNEGMLTGESIPVTKTPL
PQTENTMPWKSHSLEDYRKHVLFCGTEVIQVKPSAQGLVRAVVLQTGYNTAKGDLVRSILYPRPLNFKLY
NDAFKFMVFLACVGVVGFFYALGVYMYHEVPPRETATMALILLSATVPPVLPAALTIGNVYAQKRLKKEK
IFCISPQRINMCGQINLVCFDKTGTLTEDGLDLWGTVPTAGNCFQAVHSFASGEAVPWGPLCAAMTSCHS
LILLDGTIQGDPLDLKMFEGTGWNMEDSQVASCKFGMADSSTVIKPGPKASQSPVDSITILRQFPFSSGL
QRMSVIAQLAGDLHLHVYMKGAPEMVARFCRSETVPKNFSQELRNYTVQGFRVIALAHKTLKMERLSDMD
HLAREKVESELAFLGLLIMENRLKKETRPVLKELSEARIRTVMVTGDNLQTAITVAKNSEMIPVGSQVVI
VEANEPGDLVPASVTWQLVGTQEPGSGKKDTYIDIGNSSVPAGKGYHFAMSGKSYQVLFHHFYSMLPQIL
VNGTIFARMSPGQKSSLVEEFQKLNYYVGMCGDGANDCGALKMAHAGISLSEQEASVASPFTSKTANIEC
VPHLIREGRAALVSSFGVFKYLTMYGIIQFIGTSLLYWQLQLFGNYQYLLQDVAITLMVSLTMSINHAYP
KLAPYRPAGQLLSPQLLLSVFMNSCFTCIVQVCTFLTVKQQPWYCEVYKYSECFLVNQSNLSANVSLDRN
WTGNATLVPASVLSFEGTTLWPIVTFNCISAAFIFSKGKPFRKPIYANYLFSLLLASAAGLTIFILFCDF
QDLYRKMEFIPTPTSWRVSILIAAFVQFCVAFFVEDAVLQNRELWLFIKKEFGFYSKSQYRILQRKLAED
STWPPVNRTDYAVNGKNGFYVNRAYESPEEVPKGKLKLEEQASEQHFWTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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