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Report for CCDS70413.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70413.1 Public Mus musculus 12 Spata7 23 108 98 CCDS HistoryNCBI Gene:104871Re-query CCDS DB by CCDS ID:70413.1Re-query CCDS DB by GeneID:104871See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70413.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101146.3 ENSMUSP00000098705.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101146.3Link to Ensembl Protein Viewer:ENSMUSP00000098705.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101146Re-query CCDS DB by Protein ID:ENSMUSP00000098705
Original member Current member NCBI NM_001289572.1 NP_001276501.1 Accepted alive Link to Nucleotide Sequence:NM_001289572.1Link to Protein Sequence:NP_001276501.1Re-query CCDS DB by Nucleotide ID:NM_001289572Re-query CCDS DB by Protein ID:NP_001276501Link to BLAST:NP_001276501.1

Chromosomal Locations for CCDS 70413.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 98628316 98628334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98631963 98632037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98637566 98637613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98648349 98648482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98658213 98658646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98659550 98659616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98661972 98662087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98663165 98663218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98664228 98664305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98668832 98668889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 98669102 98669671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGGATGGCAGCCGGAGAGTCAGAGCAACCTCTGTCCTCCCCAGATACAGCCCTCCATGCTTGTTTACAG
GACACCTGAGCACCAAGAGCAACGCCGCAGTGGACTGCTCAATTCCAGTAAGTGTGAATACTAGCATCAA
ATATGCTGACCAACAACGAAGAGAAAAACTGAGGAAGGAGTTGGCACGGTGTGAAAAGGAGTTTAAATTA
AGTAAATCTGCTATGCAGACCAATTCTAAGATGAATTCCAAGTTCTTTGTAAATTCTCTACAGAAGCCCT
CAGGGGAACCACAAGACCAGGATGTGTTCATAGAAGAAATGACAAGATACCCATCATTTTCAAAGTCACT
CATCCCTTCTTCCGAGGGACTGCATCTAAGTCTGCCTGAATCAAGTAAGATGCTCATGAGTGGCACCCAG
AAGCATGCCAGCACCTCTCCATCCAGACACTCAGGCTGTGGGCATGGCTGCGACAGGCGGCCTCGGAGTG
CCCACCAGTTCCAGGTAGCCCTCGCCAAGACCCCAAGTGGAGATCTGTTGGAAAAGCACTCTGACCTCTT
CTCTAACAAGCAGTCGCCATTCACTCCACGAACTTTAAAAACAGAAGCAAAGTCCTTCCTGTCACAGTAC
CGCTACTACACACCTGCCAAAAGAAGAAAGGATTTTTCAGATCAGCGGATGGAAGCTGAAACCCAAACTG
AATTAAGCAGCTTTAACTCTGAGCTTGGGACAGCTGAGAAAACGAGCTCAAAGGACTCAGAAGTGAACAT
AAACCAGGTACCTAATTACACGAGAAATGGTGCTGAAGACAAAATAGCTCCTTTACCCTCACAAGGACAA
AACTTAGCATGGGACAGTATTCAAGATGGGATTCTGCAGCAGTCCTCAGAAAGGGCATCCTGTAAGCTCT
CCACAGAGTTTTCTCCAGACAGTAAAATCTACTCTGATGAAGAAGAGCTGCTGTACCTGAGTTTCATGGA
AAATGTGACGGATGAAATCTTGAAACTTGGTTTATTTTCTAACAGGTTTCTAGAGCGACTGTTTGAGCGA
CATATAAAGAAAAATAAACATCATTTGGAGGAGGGAAAGATGCGCTACCTGCTGCATGGGCTGAAGGTTG
ACTTAGGCTGCATATCTGAGGAAGACCCAGCAAAGCAAAAACATTTCAGAATGTTGAATCAACTTCATTT
TCAAAAGGCTCTGATTTCAAGAGAAAATGAGTTTGTAAGTGATGAAGAAACAGTGAGTCACCACGAGCGC
CAGCAGTACCAGGAGGCCCTGGACATGCTGTCGGCTGTGCCGAAGGACGAAAACAAGATGTTCTCTTTAC
CGGGCGAATTTTTAATACCCGCCCATAAAGTCAAGCATTCAGAGGGTGTTATAATTCAACAGGTCAATGA
CGAAACAGATAATGAAGCCTCACCCTGGAATGAAAACAATCCAAGTGTTTCTGATAGTGTAATAGACCAG
GAAACCTCTGTGGATGTCATTGAAGGTGACAGTGACTTTGAAAGGGCTGAGACTTCCAGGGAACTCTGTT
GTCTGAGCACATCACTGTCCCCATCTGGTCCATTCCCCAGCATCAATGGTGGCAGTAATCATGGTAAGGA
ATTATCGACTCTACGAATCATGGGAATGAGCATTGAAGACTGA

Translation (550 aa):
MDGSRRVRATSVLPRYSPPCLFTGHLSTKSNAAVDCSIPVSVNTSIKYADQQRREKLRKELARCEKEFKL
SKSAMQTNSKMNSKFFVNSLQKPSGEPQDQDVFIEEMTRYPSFSKSLIPSSEGLHLSLPESSKMLMSGTQ
KHASTSPSRHSGCGHGCDRRPRSAHQFQVALAKTPSGDLLEKHSDLFSNKQSPFTPRTLKTEAKSFLSQY
RYYTPAKRRKDFSDQRMEAETQTELSSFNSELGTAEKTSSKDSEVNINQVPNYTRNGAEDKIAPLPSQGQ
NLAWDSIQDGILQQSSERASCKLSTEFSPDSKIYSDEEELLYLSFMENVTDEILKLGLFSNRFLERLFER
HIKKNKHHLEEGKMRYLLHGLKVDLGCISEEDPAKQKHFRMLNQLHFQKALISRENEFVSDEETVSHHER
QQYQEALDMLSAVPKDENKMFSLPGEFLIPAHKVKHSEGVIIQQVNDETDNEASPWNENNPSVSDSVIDQ
ETSVDVIEGDSDFERAETSRELCCLSTSLSPSGPFPSINGGSNHGKELSTLRIMGMSIED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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