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Report for CCDS6969.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6969.1 Public Homo sapiens 9 REXO4 24 110 108 CCDS HistoryNCBI Gene:57109Re-query CCDS DB by CCDS ID:6969.1Re-query CCDS DB by GeneID:57109See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6969.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371942.8 ENSP00000361010.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000371942.8Link to Ensembl Protein Viewer:ENSP00000361010.3Re-query CCDS DB by Nucleotide ID:ENST00000371942Re-query CCDS DB by Protein ID:ENSP00000361010
Original member Current member NCBI NM_020385.4 NP_065118.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020385.4Link to Protein Sequence:NP_065118.2Re-query CCDS DB by Nucleotide ID:NM_020385Re-query CCDS DB by Protein ID:NP_065118Link to BLAST:NP_065118.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065118.2 422 Q9GZR2-1 422 100% 0 0

Chromosomal Locations for CCDS 6969.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 133406953 133407072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133407807 133407881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133408768 133408842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133410985 133411073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133412299 133412492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133412778 133412921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133414665 133415011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 133417620 133417844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGGGAAGGCGAAGGTCCCCGCCTCCAAGCGCGCCCCGAGCAGCCCCGTGGCTAAGCCGGGTCCTGTCA
AGACGCTCACTCGGAAGAAAAACAAGAAGAAAAAAAGGTTTTGGAAAAGCAAGGCGCGGGAAGTAAGCAA
GAAGCCAGCAAGCGGCCCCGGTGCTGTGGTGCGACCTCCAAAGGCACCAGAAGACTTTTCTCAAAACTGG
AAGGCGCTGCAAGAGTGGCTGCTGAAACAAAAATCTCAGGCCCCAGAAAAGCCTCTTGTCATCTCTCAGA
TGGGTTCCAAAAAGAAGCCCAAAATTATCCAGCAAAACAAAAAAGAGACCTCGCCTCAAGTGAAGGGAGA
GGAGATGCCGGCAGGAAAAGACCAGGAGGCCAGCAGGGGCTCTGTTCCTTCAGGTTCCAAGATGGACAGG
AGGGCGCCAGTACCTCGCACCAAGGCCAGTGGAACAGAGCACAATAAGAAAGGAACCAAGGAAAGGACAA
ATGGTGATATTGTTCCAGAACGAGGGGACATCGAGCATAAGAAGCGGAAAGCTAAGGAGGCAGCCCCAGC
CCCACCCACCGAGGAAGACATCTGGTTTGACGACGTGGACCCAGCGGATATCGAAGCTGCCATAGGTCCA
GAGGCGGCCAAGATAGCGAGGAAACAGTTGGGTCAGAGCGAGGGCAGCGTCAGCCTCAGCCTCGTGAAAG
AGCAGGCCTTCGGCGGCCTGACAAGAGCCTTAGCCTTGGACTGTGAGATGGTGGGCGTGGGCCCTAAGGG
GGAGGAGAGCATGGCCGCCCGTGTGTCCATCGTGAACCAGTATGGGAAGTGCGTTTATGACAAGTACGTC
AAACCAACCGAGCCCGTGACGGACTATAGGACAGCGGTCAGTGGGATTCGGCCTGAGAACCTCAAGCAGG
GAGAAGAGCTTGAAGTTGTTCAGAAGGAAGTGGCAGAGATGCTGAAGGGCAGAATTCTAGTGGGGCACGC
TCTGCATAATGACCTAAAGGTACTATTTCTTGATCATCCAAAAAAGAAGATTCGGGACACACAGAAATAT
AAACCTTTCAAGAGTCAAGTAAAGAGTGGAAGGCCGTCTCTGAGACTACTTTCAGAGAAGATCCTTGGGC
TCCAGGTCCAGCAGGCGGAGCACTGTTCAATTCAGGATGCCCAGGCAGCAATGAGGCTGTACGTCATGGT
GAAGAAGGAGTGGGAGAGCATGGCCCGAGACAGGCGCCCCCTGCTGACTGCTCCAGACCACTGCAGTGAC
GACGCCTAG

Translation (422 aa):
MGKAKVPASKRAPSSPVAKPGPVKTLTRKKNKKKKRFWKSKAREVSKKPASGPGAVVRPPKAPEDFSQNW
KALQEWLLKQKSQAPEKPLVISQMGSKKKPKIIQQNKKETSPQVKGEEMPAGKDQEASRGSVPSGSKMDR
RAPVPRTKASGTEHNKKGTKERTNGDIVPERGDIEHKKRKAKEAAPAPPTEEDIWFDDVDPADIEAAIGP
EAAKIARKQLGQSEGSVSLSLVKEQAFGGLTRALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYV
KPTEPVTDYRTAVSGIRPENLKQGEELEVVQKEVAEMLKGRILVGHALHNDLKVLFLDHPKKKIRDTQKY
KPFKSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKEWESMARDRRPLLTAPDHCSD
DA


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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