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Report for CCDS6953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6953.1 Public Homo sapiens 9 GTF3C4 24 110 108 CCDS HistoryNCBI Gene:9329Re-query CCDS DB by CCDS ID:6953.1Re-query CCDS DB by GeneID:9329See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000372146.5 ENSP00000361219.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000372146.5Link to Ensembl Protein Viewer:ENSP00000361219.4Re-query CCDS DB by Nucleotide ID:ENST00000372146Re-query CCDS DB by Protein ID:ENSP00000361219
Original member Current member NCBI NM_012204.4 NP_036336.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_012204.4Link to Protein Sequence:NP_036336.2Re-query CCDS DB by Nucleotide ID:NM_012204Re-query CCDS DB by Protein ID:NP_036336Link to BLAST:NP_036336.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036336.2 822 Q9UKN8 822 100% 0 0

Chromosomal Locations for CCDS 6953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 132670599 132670955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132677977 132679803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132683563 132683693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132687239 132687327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 132688881 132688945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2469 nt):
ATGAACACGGCCGACCAGGCCCGGGTGGGGCCCGCGGACGACGGGCCTGCGCCGTCTGGGGAGGAGGAGG
GAGAGGGGGGCGGCGAGGCGGGCGGGAAGGAGCCAGCAGCGGACGCGGCCCCGGGGCCCAGCGCTGCATT
CCGCCTCATGGTGACTCGGCGGGAGCCGGCCGTGAAGCTGCAGTATGCGGTGAGCGGCCTGGAACCGCTG
GCTTGGTCCGAGGACCACCGCGTGTCTGTGTCCACGGCCCGCAGCATCGCTGTGCTGGAGCTCATCTGCG
ACGTGCACAACCCGGGCCAGGACCTGGTTATCCACCGCACCTCGGTGCCCGCACCGCTCAACAGCTGTCT
CCTCAAAGTTGGCTCAAAAACAGAAGTTGCTGAGTGCAAGGAGAAATTCGCCGCCTCCAAGGACCCCACG
GTCAGTCAGACTTTCATGTTGGATAGGGTGTTCAACCCTGAGGGGAAGGCTTTACCACCAATGAGAGGAT
TCAAGTACACCAGCTGGTCTCCCATGGGTTGCGATGCTAATGGCAGGTGCCTCTTGGCAGCACTGACCAT
GGACAATCGCCTGACCATCCAGGCAAATCTCAACAGACTGCAGTGGGTCCAGCTGGTTGACCTGACTGAG
ATCTATGGAGAACGTCTTTATGAGACCAGTTACAGGCTCTCTAAAAATGAGGCCCCGGAAGGAAATCTCG
GGGATTTTGCTGAGTTTCAGAGGAGACACAGCATGCAGACCCCAGTCAGAATGGAGTGGTCGGGCATCTG
TACCACCCAGCAGGTCAAGCATAACAACGAATGCCGGGACGTTGGCAGTGTGCTCCTGGCTGTCCTCTTT
GAAAACGGTAATATCGCCGTGTGGCAGTTTCAGCTGCCGTTTGTAGGAAAAGAATCCATCTCTTCATGCA
ACACAATTGAGTCAGGAATCACCTCTCCCAGTGTATTGTTTTGGTGGGAATATGAGCACAATAATCGAAA
AATGAGTGGCCTTATTGTGGGGAGTGCTTTTGGACCCATAAAAATTCTTCCTGTCAATCTCAAAGCAGTC
AAAGGCTATTTCACTTTAAGGCAGCCTGTTATCTTGTGGAAAGAAATGGACCAGTTACCTGTGCACAGTA
TCAAATGTGTGCCACTTTATCATCCTTACCAGAAGTGTAGTTGCAGCTTAGTAGTGGCTGCAAGAGGCTC
TTATGTATTTTGGTGTCTTCTTCTGATCTCCAAAGCAGGGCTGAATGTTCACAATTCCCATGTCACAGGC
CTTCACTCACTGCCAATTGTCTCCATGACTGCAGACAAACAGAATGGAACAGTCTATACTTGCTCCAGTG
ACGGAAAGGTGAGGCAGCTGATTCCCATTTTCACAGATGTTGCATTGAAGTTTGAACACCAGTTGATTAA
ACTCTCAGATGTGTTTGGCTCAGTGAGGACTCACGGGATAGCAGTGAGCCCCTGCGGTGCATACCTGGCC
ATCATCACCACTGAGGGCATGATCAACGGCCTCCACCCTGTTAACAAAAACTACCAGGTCCAATTTGTTA
CTCTCAAAACCTTTGAAGAGGCAGCTGCTCAGCTCCTGGAATCTTCAGTTCAAAACCTTTTTAAGCAGGT
AGATTTAATAGACCTAGTACGCTGGAAGATTTTAAAAGATAAACATATCCCTCAATTTTTACAAGAAGCT
TTGGAAAAAAAGATTGAAAGCAGTGGAGTCACCTATTTTTGGCGTTTTAAGCTTTTCCTCCTGAGGATTT
TATATCAGTCAATGCAGAAAACCCCTTCAGAAGCCTTGTGGAAACCCACCCATGAGGACTCAAAAATCTT
ACTAGTGGATTCGCCTGGGATGGGCAATGCTGACGATGAACAGCAGGAAGAAGGCACTTCTTCCAAACAG
GTGGTGAAGCAAGGCCTGCAGGAGAGGAGCAAGGAAGGAGATGTAGAGGAGCCCACTGATGACTCGCTCC
CCACGACTGGAGATGCTGGAGGCCGTGAGCCAATGGAAGAGAAACTCCTGGAAATCCAAGGGAAAATCGA
AGCTGTGGAGATGCACTTGACCAGGGAACACATGAAGCGAGTCTTAGGAGAAGTGTATCTGCACACCTGG
ATCACAGAAAACACTAGCATCCCCACCCGCGGACTCTGTAACTTTTTAATGTCTGATGAAGAGTATGATG
ACAGAACTGCACGGGTGCTGATTGGACATATCTCAAAGAAGATGAACAAACAGACTTTCCCTGAGCACTG
TAGTTTGTGTAAAGAGATCTTGCCATTCACAGATCGCAAACAGGCAGTCTGTTCCAATGGCCACATTTGG
CTCCGGTGCTTCTTAACCTACCAGTCCTGCCAGAGTTTGATATATAGAAGGTGTTTGCTCCATGACAGCA
TTGCCCGGCATCCAGCTCCAGAAGATCCCGACTGGATTAAGAGGTTACTGCAAAGCCCCTGCCCTTTCTG
TGATTCTCCTGTCTTCTAA

Translation (822 aa):
MNTADQARVGPADDGPAPSGEEEGEGGGEAGGKEPAADAAPGPSAAFRLMVTRREPAVKLQYAVSGLEPL
AWSEDHRVSVSTARSIAVLELICDVHNPGQDLVIHRTSVPAPLNSCLLKVGSKTEVAECKEKFAASKDPT
VSQTFMLDRVFNPEGKALPPMRGFKYTSWSPMGCDANGRCLLAALTMDNRLTIQANLNRLQWVQLVDLTE
IYGERLYETSYRLSKNEAPEGNLGDFAEFQRRHSMQTPVRMEWSGICTTQQVKHNNECRDVGSVLLAVLF
ENGNIAVWQFQLPFVGKESISSCNTIESGITSPSVLFWWEYEHNNRKMSGLIVGSAFGPIKILPVNLKAV
KGYFTLRQPVILWKEMDQLPVHSIKCVPLYHPYQKCSCSLVVAARGSYVFWCLLLISKAGLNVHNSHVTG
LHSLPIVSMTADKQNGTVYTCSSDGKVRQLIPIFTDVALKFEHQLIKLSDVFGSVRTHGIAVSPCGAYLA
IITTEGMINGLHPVNKNYQVQFVTLKTFEEAAAQLLESSVQNLFKQVDLIDLVRWKILKDKHIPQFLQEA
LEKKIESSGVTYFWRFKLFLLRILYQSMQKTPSEALWKPTHEDSKILLVDSPGMGNADDEQQEEGTSSKQ
VVKQGLQERSKEGDVEEPTDDSLPTTGDAGGREPMEEKLLEIQGKIEAVEMHLTREHMKRVLGEVYLHTW
ITENTSIPTRGLCNFLMSDEEYDDRTARVLIGHISKKMNKQTFPEHCSLCKEILPFTDRKQAVCSNGHIW
LRCFLTYQSCQSLIYRRCLLHDSIARHPAPEDPDWIKRLLQSPCPFCDSPVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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